Variant report

Variant	rs1706923
Chromosome Location	chr7:105221097-105221098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105070328..105070906-chr7:105220714..105221215,2	MCF-7	breast:
2	chr7:105219144..105221709-chr7:105228582..105231140,2	MCF-7	breast:
3	chr7:105159598..105163989-chr7:105219696..105223115,7	MCF-7	breast:
4	chr7:105214069..105215828-chr7:105219322..105221521,2	MCF-7	breast:
5	chr19:5690148..5691832-chr7:105220231..105223207,2	K562	blood:

Variant related genes	Relation type
ENSG00000130255	Chromatin interaction
ENSG00000091127	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1706888	0.82[EUR][1000 genomes]
rs1706914	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[EUR][1000 genomes]
rs1706915	0.92[CEU][hapmap];0.88[EUR][1000 genomes]
rs1728649	0.82[EUR][1000 genomes]
rs1918875	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2697021	0.82[EUR][1000 genomes]
rs67661063	0.85[EUR][1000 genomes]
rs6958252	0.90[CHB][hapmap]
rs711427	1.00[CEU][hapmap];0.83[LWK][hapmap];0.84[MKK][hapmap];0.92[TSI][hapmap]
rs711432	0.80[EUR][1000 genomes]
rs711433	1.00[CEU][hapmap];0.87[LWK][hapmap];0.87[MKK][hapmap];0.92[TSI][hapmap];0.82[EUR][1000 genomes]
rs711436	0.82[EUR][1000 genomes]
rs818481	0.82[EUR][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1706923	FLJ20485	cis	multi-tissue	Pritchard
rs1706923	SMCP	trans	cerebellum	SCAN
rs1706923	LOC339524	trans	parietal	SCAN

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105193200-105221400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr7:105193200-105221600	Weak transcription	Aorta	Aorta
3	chr7:105196000-105221600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr7:105199400-105221600	Weak transcription	Pancreas	Pancrea
5	chr7:105201000-105221600	Weak transcription	Colonic Mucosa	Colon
6	chr7:105202000-105221600	Weak transcription	Esophagus	oesophagus
7	chr7:105205400-105221400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr7:105205600-105221600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr7:105206200-105221600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:105206200-105221600	Weak transcription	HUVEC	blood vessel
11	chr7:105206400-105221400	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:105206400-105221600	Weak transcription	Fetal Kidney	kidney
13	chr7:105207000-105221400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:105207000-105221400	Weak transcription	Fetal Brain Female	brain
15	chr7:105207000-105221800	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr7:105208200-105221600	Weak transcription	HepG2	liver
17	chr7:105208400-105221400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr7:105208400-105221600	Weak transcription	NHDF-Ad	bronchial
19	chr7:105208600-105221200	Weak transcription	Brain Cingulate Gyrus	brain
20	chr7:105208600-105221400	Weak transcription	Brain Germinal Matrix	brain
21	chr7:105208600-105221400	Weak transcription	NH-A	brain
22	chr7:105208600-105221600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr7:105208600-105221600	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr7:105208600-105221600	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr7:105208600-105221600	Weak transcription	Right Ventricle	heart
26	chr7:105209200-105221400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:105209200-105221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr7:105209200-105221600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:105209200-105221600	Weak transcription	NHLF	lung
30	chr7:105209400-105221600	Weak transcription	Primary B cells from peripheral blood	blood
31	chr7:105209400-105221600	Weak transcription	Left Ventricle	heart
32	chr7:105209600-105221600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:105209600-105221600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr7:105209600-105221600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr7:105209600-105221600	Weak transcription	Thymus	Thymus
36	chr7:105210000-105221400	Weak transcription	Brain Anterior Caudate	brain
37	chr7:105210000-105221400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr7:105210000-105221600	Weak transcription	Primary B cells from cord blood	blood
39	chr7:105210000-105221600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr7:105210200-105221400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr7:105210200-105221400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr7:105210200-105221600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr7:105210200-105221600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr7:105210200-105221600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:105210200-105221600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr7:105210200-105221600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:105210200-105221600	Weak transcription	Liver	Liver
48	chr7:105210200-105221600	Weak transcription	Osteobl	bone
49	chr7:105210400-105221400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
50	chr7:105210400-105221600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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