Variant report

Variant	rs17074908
Chromosome Location	chr13:51338642-51338643
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1323887	1.00[ASN][1000 genomes]
rs17074927	1.00[EUR][1000 genomes]
rs17350448	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476617	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2476619	1.00[ASN][1000 genomes]
rs2476624	1.00[ASN][1000 genomes]
rs2497094	1.00[ASN][1000 genomes]
rs73492049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73495626	1.00[EUR][1000 genomes]
rs74081116	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74081118	1.00[ASN][1000 genomes]
rs7984960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989422	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7989430	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7990412	1.00[EUR][1000 genomes]
rs7990423	1.00[ASN][1000 genomes]
rs7996529	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591350	1.00[ASN][1000 genomes]
rs9596342	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596343	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1037350	chr13:51272518-51447354	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51331000-51342600	Weak transcription	HepG2	liver
2	chr13:51336400-51340800	Enhancers	Primary B cells from peripheral blood	blood
3	chr13:51336600-51339400	Enhancers	Primary B cells from cord blood	blood
4	chr13:51337400-51340200	Weak transcription	Thymus	Thymus
5	chr13:51337600-51340200	Weak transcription	Brain Anterior Caudate	brain
6	chr13:51337800-51339800	Weak transcription	Fetal Thymus	thymus
7	chr13:51337800-51340600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr13:51338000-51339800	Weak transcription	Dnd41	blood
9	chr13:51338000-51340000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr13:51338000-51340200	Weak transcription	Brain Angular Gyrus	brain
11	chr13:51338000-51340400	Weak transcription	Brain Hippocampus Middle	brain
12	chr13:51338200-51339800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr13:51338200-51340000	Weak transcription	Brain Substantia Nigra	brain
14	chr13:51338200-51341000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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