Variant report

Variant	rs17078502
Chromosome Location	chr6:148938308-148938309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10872616	0.83[MEX][hapmap]
rs11155578	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11966900	0.81[EUR][1000 genomes]
rs12528752	0.84[EUR][1000 genomes]
rs2065147	0.84[EUR][1000 genomes]
rs35105989	0.81[EUR][1000 genomes]
rs4895759	0.84[EUR][1000 genomes]
rs4895760	0.83[EUR][1000 genomes]
rs911979	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17078502	EPM2A	cis	cerebellum	SCAN
rs17078502	C6orf103	cis	cerebellum	SCAN
rs17078502	FLJ37453	trans	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:148933200-148938800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:148937600-148938800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:148937800-148938400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:148938200-148939200	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr6:148938200-148939200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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