Variant report
| Variant | rs17079342 |
|---|---|
| Chromosome Location | chr6:150451933-150451934 |
| allele | A/C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:150450612..150452742-chr6:150455452..150457364,2 | K562 | blood: | |
| 2 | chr6:150449407..150453183-chr6:150455080..150457364,4 | K562 | blood: | |
| 3 | chr6:150451217..150453033-chr6:150459059..150461141,2 | MCF-7 | breast: | |
| 4 | chr6:150449726..150452663-chr6:150462298..150465510,3 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000198729 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs11965674 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11965684 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11965744 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11966337 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11967151 | 1.00[AMR][1000 genomes] |
| rs17079341 | 0.85[AMR][1000 genomes] |
| rs17079351 | 1.00[AMR][1000 genomes] |
| rs56046004 | 0.85[AMR][1000 genomes] |
| rs73603955 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73603958 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73605921 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7749549 | 1.00[AMR][1000 genomes] |
| rs7759549 | 0.83[AMR][1000 genomes] |
| rs9479743 | 1.00[AMR][1000 genomes] |
| rs9479744 | 0.90[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv886770 | chr6:150395424-150499889 | Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026690 | chr6:150419115-150485583 | Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:150440600-150452600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
