Variant report

Variant	rs17079397
Chromosome Location	chr6:150509590-150509591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:24025848..24027674-chr6:150509180..150510739,2	MCF-7	breast:
2	chr6:150499104..150501184-chr6:150507779..150510819,3	K562	blood:

Variant related genes	Relation type
ENSG00000259431	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11155709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11155710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11751046	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11755697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11759065	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs12195287	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215483	0.89[CHB][hapmap]
rs9322250	0.80[CEU][hapmap]
rs9397194	0.80[CEU][hapmap];0.82[EUR][1000 genomes]
rs9397725	0.86[EUR][1000 genomes]
rs9478551	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150497800-150511000	Weak transcription	NHEK	skin
2	chr6:150499600-150519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150502400-150511800	Weak transcription	Right Atrium	heart
4	chr6:150504200-150510600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:150505600-150510400	Weak transcription	Right Ventricle	heart
6	chr6:150506600-150512000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:150506600-150515600	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr6:150506800-150512000	Weak transcription	HMEC	breast
9	chr6:150507000-150513200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:150507200-150510800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:150507200-150511200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:150507400-150510400	Weak transcription	Fetal Intestine Large	intestine
13	chr6:150507600-150510200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:150507600-150510200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:150507600-150510400	Weak transcription	Fetal Intestine Small	intestine
16	chr6:150507600-150512000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:150508000-150510400	Weak transcription	Fetal Heart	heart
18	chr6:150508000-150511000	Weak transcription	Left Ventricle	heart
19	chr6:150508000-150513600	Weak transcription	Lung	lung
20	chr6:150508400-150517000	Weak transcription	K562	blood
21	chr6:150509400-150510400	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links