Variant report

Variant	rs17079407
Chromosome Location	chr6:150524902-150524903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150523335..150526077-chr6:150588121..150590622,2	MCF-7	breast:
2	chr6:150518298..150521152-chr6:150523437..150526060,2	K562	blood:
3	chr6:150520781..150525407-chr6:150526478..150529331,4	K562	blood:
4	chr6:150521985..150525407-chr6:150525748..150528930,3	K562	blood:
5	chr6:150514870..150517111-chr6:150523756..150525398,2	MCF-7	breast:
6	chr6:150524597..150525171-chr6:150654629..150655279,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1535148	1.00[JPT][hapmap]
rs9479944	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150517600-150529200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:150518200-150530800	Enhancers	Fetal Heart	heart
3	chr6:150520200-150525200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:150521600-150526600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:150523200-150525200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:150523200-150525200	Enhancers	HMEC	breast
7	chr6:150523200-150525400	Enhancers	Esophagus	oesophagus
8	chr6:150523200-150526600	Enhancers	Left Ventricle	heart
9	chr6:150523200-150526600	Enhancers	Right Ventricle	heart
10	chr6:150523400-150525000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:150523400-150525000	Enhancers	Primary T cells fromperipheralblood	blood
12	chr6:150523600-150525400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr6:150523600-150526000	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:150523600-150526600	Weak transcription	Pancreas	Pancrea
15	chr6:150523800-150525000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr6:150523800-150525800	Weak transcription	Lung	lung
17	chr6:150523800-150526200	Weak transcription	Small Intestine	intestine
18	chr6:150524000-150525400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:150524000-150525400	Enhancers	Right Atrium	heart
20	chr6:150524000-150526200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr6:150524000-150532400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:150524200-150525000	Enhancers	Fetal Muscle Leg	muscle
23	chr6:150524200-150525600	Weak transcription	K562	blood
24	chr6:150524200-150526200	Weak transcription	Placenta	Placenta
25	chr6:150524200-150526600	Enhancers	Psoas Muscle	Psoas
26	chr6:150524400-150525400	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr6:150524400-150525800	Weak transcription	Colonic Mucosa	Colon
28	chr6:150524400-150526400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
29	chr6:150524600-150525400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
30	chr6:150524600-150526200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:150524800-150525200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
32	chr6:150524800-150525400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
33	chr6:150524800-150525600	Weak transcription	NHEK	skin
34	chr6:150524800-150525800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:150524800-150526200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr6:150524800-150528400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr6:150524800-150528400	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links