Variant report

Variant	rs17079757
Chromosome Location	chr6:150779848-150779849
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17079779	1.00[AMR][1000 genomes]
rs56948265	1.00[AMR][1000 genomes]
rs58223803	1.00[AMR][1000 genomes]
rs59573747	1.00[AMR][1000 genomes]
rs59762732	1.00[AMR][1000 genomes]
rs73619627	1.00[AMR][1000 genomes]
rs73619628	1.00[AMR][1000 genomes]
rs73619632	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv886773	chr6:150751951-150799803	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150774800-150780600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:150777400-150780000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:150777600-150781400	Weak transcription	Spleen	Spleen
4	chr6:150777800-150780800	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:150779200-150780200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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