Variant report

Variant	rs17079961
Chromosome Location	chr6:150929618-150929619
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17422247	0.88[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35178930	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55958968	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv464080	chr6:150923115-150941310	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
3	nsv604851	chr6:150923115-150941310	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150922200-150930600	Weak transcription	Aorta	Aorta
2	chr6:150922400-150941400	Weak transcription	Colonic Mucosa	Colon
3	chr6:150923000-150938600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr6:150923600-150930800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:150925600-150931600	Genic enhancers	Fetal Thymus	thymus
6	chr6:150927800-150930200	Enhancers	Small Intestine	intestine
7	chr6:150928000-150937400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:150928200-150938600	Weak transcription	Fetal Intestine Small	intestine
9	chr6:150928200-150944800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:150928400-150930600	Weak transcription	Left Ventricle	heart
11	chr6:150928400-150938600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:150928400-150938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:150928400-150939600	Weak transcription	Brain Angular Gyrus	brain
14	chr6:150928400-150940600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:150928400-150952800	Weak transcription	Right Ventricle	heart
16	chr6:150928600-150930400	Weak transcription	Fetal Heart	heart
17	chr6:150928600-150933800	Weak transcription	Lung	lung
18	chr6:150928600-150933800	Weak transcription	HUVEC	blood vessel
19	chr6:150928600-150938200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr6:150928600-150938600	Weak transcription	Brain Substantia Nigra	brain
21	chr6:150928600-150948800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr6:150928800-150933800	Weak transcription	Liver	Liver
23	chr6:150929000-150930400	Weak transcription	Placenta	Placenta
24	chr6:150929000-150930600	Weak transcription	Spleen	Spleen
25	chr6:150929000-150930800	Weak transcription	Right Atrium	heart
26	chr6:150929000-150932200	Weak transcription	Ovary	ovary
27	chr6:150929000-150938600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:150929000-150938800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:150929200-150930600	Weak transcription	Fetal Kidney	kidney
30	chr6:150929400-150929800	Weak transcription	Thymus	Thymus
31	chr6:150929400-150930000	Weak transcription	Primary B cells from peripheral blood	blood
32	chr6:150929400-150941400	Weak transcription	Fetal Stomach	stomach
33	chr6:150929600-150929800	Weak transcription	Primary B cells from cord blood	blood
34	chr6:150929600-150930600	Weak transcription	Fetal Lung	lung

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