Variant report

Variant	rs17081249
Chromosome Location	chr13:66979778-66979779
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:66978910..66981496-chr13:66983194..66984802,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17081266	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17081269	1.00[CHB][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73205658	1.00[AFR][1000 genomes]
rs73205683	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73207686	1.00[AFR][1000 genomes]
rs73209605	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530416	chr13:66198235-67126195	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv1053763	chr13:66210166-67184972	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv541811	chr13:66210166-67184972	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv932195	chr13:66215786-67215733	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv530723	chr13:66219650-67200316	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv1052017	chr13:66232288-67213033	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv534503	chr13:66287963-67126195	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv915828	chr13:66544825-67212201	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
9	nsv1041133	chr13:66723731-67530595	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv1051051	chr13:66948744-67126296	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:66975600-66983800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:66977400-66979800	Weak transcription	A549	lung
3	chr13:66978000-66981800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr13:66978400-66981600	Enhancers	HSMM	muscle
5	chr13:66978600-66980000	Weak transcription	Brain Anterior Caudate	brain
6	chr13:66978600-66981200	Enhancers	NHEK	skin
7	chr13:66979200-66980000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr13:66979200-66980600	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr13:66979200-66981400	Enhancers	HSMMtube	muscle
10	chr13:66979200-66982000	Enhancers	Brain Cingulate Gyrus	brain
11	chr13:66979400-66980200	Enhancers	Adipose Nuclei	Adipose
12	chr13:66979400-66981600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr13:66979600-66980200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr13:66979600-66980200	Enhancers	Osteobl	bone
15	chr13:66979600-66980400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr13:66979600-66980600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr13:66979600-66980800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
18	chr13:66979600-66980800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr13:66979600-66980800	Enhancers	HMEC	breast
20	chr13:66979600-66981200	Enhancers	Brain Substantia Nigra	brain
21	chr13:66979600-66981400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr13:66979600-66981600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr13:66979600-66981800	Enhancers	Brain Hippocampus Middle	brain
24	chr13:66979600-66983200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr13:66979600-66984200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links