Variant report

Variant	rs17082230
Chromosome Location	chr13:67754717-67754718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1114473	1.00[EUR][1000 genomes]
rs17082065	1.00[EUR][1000 genomes]
rs17082089	1.00[EUR][1000 genomes]
rs17082112	1.00[EUR][1000 genomes]
rs17082157	1.00[EUR][1000 genomes]
rs17082160	1.00[EUR][1000 genomes]
rs17082164	1.00[EUR][1000 genomes]
rs17082175	1.00[EUR][1000 genomes]
rs17082259	1.00[EUR][1000 genomes]
rs17082262	1.00[EUR][1000 genomes]
rs57566819	1.00[EUR][1000 genomes]
rs58592465	1.00[EUR][1000 genomes]
rs58767113	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7321140	1.00[EUR][1000 genomes]
rs73511496	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035741	chr13:67212973-68077950	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv541817	chr13:67212973-68077950	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv430581	chr13:67572850-67762288	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv430582	chr13:67589898-67762299	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1053514	chr13:67687520-67775011	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:67731400-67795400	Weak transcription	Primary B cells from cord blood	blood
2	chr13:67748800-67755000	Weak transcription	Brain Angular Gyrus	brain
3	chr13:67748800-67755600	Weak transcription	Brain Hippocampus Middle	brain
4	chr13:67750600-67780800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr13:67751200-67761200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr13:67751800-67755800	Weak transcription	Brain Substantia Nigra	brain
7	chr13:67752000-67761000	Weak transcription	Brain Anterior Caudate	brain
8	chr13:67754400-67755000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr13:67754600-67755200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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