Variant report

Variant	rs17082757
Chromosome Location	chr5:92281405-92281406
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10463223	0.85[EUR][1000 genomes]
rs10514364	0.95[EUR][1000 genomes]
rs12054859	0.85[EUR][1000 genomes]
rs17082799	0.90[EUR][1000 genomes]
rs17082810	0.85[EUR][1000 genomes]
rs60593995	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92277200-92283400	Enhancers	HepG2	liver
2	chr5:92280000-92282200	Enhancers	Fetal Kidney	kidney
3	chr5:92280200-92281600	Enhancers	Brain Inferior Temporal Lobe	brain
4	chr5:92280200-92281600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr5:92280200-92281600	Enhancers	Fetal Lung	lung
6	chr5:92280200-92282000	Flanking Active TSS	A549	lung
7	chr5:92280400-92281600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr5:92280400-92281600	Enhancers	Brain Anterior Caudate	brain
9	chr5:92280400-92281600	Enhancers	Brain Substantia Nigra	brain
10	chr5:92280400-92282400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:92280600-92281600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:92280600-92281600	Enhancers	Fetal Intestine Large	intestine
13	chr5:92280600-92281600	Enhancers	NH-A	brain
14	chr5:92280600-92281800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:92280600-92281800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:92280600-92281800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr5:92280600-92282000	Enhancers	HSMM	muscle
18	chr5:92280600-92282200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:92280800-92281600	Enhancers	Fetal Intestine Small	intestine
20	chr5:92280800-92281600	Enhancers	HSMMtube	muscle
21	chr5:92281000-92281600	Enhancers	Liver	Liver
22	chr5:92281000-92281600	Flanking Active TSS	HUVEC	blood vessel
23	chr5:92281000-92281800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr5:92281200-92281600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr5:92281200-92281800	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr5:92281200-92281800	Enhancers	Brain Angular Gyrus	brain
27	chr5:92281400-92281600	Enhancers	NHLF	lung
28	chr5:92281400-92281600	Flanking Active TSS	Osteobl	bone
29	chr5:92281400-92282200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:92281400-92282600	Enhancers	Muscle Satellite Cultured Cells	--

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