Variant report

Variant	rs17082792
Chromosome Location	chr5:92306662-92306663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12187522	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17082808	1.00[ASN][1000 genomes]
rs57419297	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60361111	1.00[ASN][1000 genomes]
rs67632512	0.87[EUR][1000 genomes]
rs67776649	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6875183	1.00[ASN][1000 genomes]
rs6898327	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv830399	chr5:92290915-92462490	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92303000-92308000	Enhancers	HepG2	liver
2	chr5:92304600-92307600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:92305400-92308200	Enhancers	Brain Hippocampus Middle	brain
4	chr5:92305600-92307400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:92306000-92307200	Enhancers	Brain Anterior Caudate	brain
6	chr5:92306000-92307200	Enhancers	Brain Substantia Nigra	brain
7	chr5:92306400-92306800	Flanking Active TSS	A549	lung
8	chr5:92306400-92313400	Weak transcription	Brain Angular Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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