Variant report

Variant	rs17082926
Chromosome Location	chr9:72208395-72208396
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10511967	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs10746683	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10780542	1.00[MEX][hapmap]
rs1411443	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1576509	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17082946	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4330751	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60787800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6559648	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73451468	0.93[EUR][1000 genomes]
rs73451486	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893437	chr9:72118962-72223176	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72180400-72208400	Weak transcription	Gastric	stomach
2	chr9:72206200-72209000	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:72206600-72208400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr9:72206600-72208800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr9:72206600-72209000	Weak transcription	Brain Angular Gyrus	brain
6	chr9:72206800-72209200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr9:72207000-72216600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:72207400-72208400	Weak transcription	Right Atrium	heart
9	chr9:72207600-72208400	Enhancers	HUVEC	blood vessel
10	chr9:72207600-72208600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr9:72207800-72208400	Weak transcription	Brain Germinal Matrix	brain
12	chr9:72207800-72209400	Enhancers	Fetal Heart	heart
13	chr9:72207800-72220200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:72208200-72208400	Enhancers	Fetal Brain Female	brain
15	chr9:72208200-72208600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr9:72208200-72208600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr9:72208200-72209000	Enhancers	Brain Anterior Caudate	brain
18	chr9:72208200-72209200	Enhancers	Fetal Brain Male	brain
19	chr9:72208200-72209800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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