Variant report

Variant	rs17083335
Chromosome Location	chr5:93114005-93114006
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10514379	1.00[ASW][hapmap];1.00[YRI][hapmap]
rs17083311	1.00[AMR][1000 genomes]
rs58553637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348704	1.00[AMR][1000 genomes]
rs6875129	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6878031	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6897186	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772925	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73772929	1.00[AMR][1000 genomes]
rs73772931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73773533	1.00[AMR][1000 genomes]
rs7703367	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532196	chr5:92933949-93573527	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv830405	chr5:93086825-93258518	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93077200-93130400	Weak transcription	Spleen	Spleen
2	chr5:93087800-93124000	Weak transcription	Pancreas	Pancrea
3	chr5:93100600-93136200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:93101200-93164200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:93101800-93136600	Weak transcription	HSMMtube	muscle
6	chr5:93106600-93114200	Weak transcription	Fetal Brain Female	brain
7	chr5:93106800-93125400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:93106800-93132400	Weak transcription	Placenta	Placenta
9	chr5:93107000-93124800	Weak transcription	HSMM	muscle
10	chr5:93107400-93120600	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr5:93108200-93118200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr5:93108200-93118800	Weak transcription	Osteobl	bone
13	chr5:93108600-93124800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr5:93108600-93130600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr5:93108800-93114800	Weak transcription	Small Intestine	intestine
16	chr5:93108800-93115000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr5:93108800-93121600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr5:93108800-93127000	Weak transcription	Fetal Stomach	stomach
19	chr5:93108800-93130400	Weak transcription	Lung	lung
20	chr5:93108800-93137400	Weak transcription	Right Ventricle	heart
21	chr5:93109000-93136800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:93109200-93117800	Weak transcription	Esophagus	oesophagus
23	chr5:93109200-93159600	Weak transcription	Thymus	Thymus
24	chr5:93109400-93117200	Weak transcription	Brain Substantia Nigra	brain
25	chr5:93109400-93124800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:93109400-93136800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr5:93110000-93114800	Weak transcription	Gastric	stomach
28	chr5:93110000-93130600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:93110200-93136600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr5:93110600-93115200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:93110600-93125400	Weak transcription	Fetal Lung	lung
32	chr5:93111400-93115000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr5:93111400-93115200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:93111400-93121000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:93111400-93121800	Weak transcription	Primary T helper cells PMA-I stimulated	--
36	chr5:93111400-93130200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr5:93111400-93130400	Weak transcription	Aorta	Aorta
38	chr5:93111400-93130400	Weak transcription	Fetal Intestine Large	intestine
39	chr5:93111400-93130400	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:93111400-93136000	Weak transcription	Fetal Brain Male	brain
41	chr5:93111400-93142200	Weak transcription	Dnd41	blood
42	chr5:93111400-93159000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr5:93111600-93118200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr5:93111600-93118800	Weak transcription	Colon Smooth Muscle	Colon
45	chr5:93111600-93119200	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr5:93111600-93124800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr5:93111600-93124800	Weak transcription	Fetal Kidney	kidney
48	chr5:93111600-93179800	Weak transcription	Left Ventricle	heart
49	chr5:93111800-93118600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr5:93111800-93129400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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