Variant report

Variant	rs17086211
Chromosome Location	chr4:56839372-56839373
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56823348..56825080-chr4:56837763..56840260,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10004239	1.00[AMR][1000 genomes]
rs10022738	1.00[AMR][1000 genomes]
rs10213231	1.00[AMR][1000 genomes]
rs12331143	1.00[AMR][1000 genomes]
rs28368303	1.00[AMR][1000 genomes]
rs28376464	1.00[AMR][1000 genomes]
rs28470583	1.00[AMR][1000 genomes]
rs28472737	1.00[AMR][1000 genomes]
rs28573719	1.00[AMR][1000 genomes]
rs28587231	1.00[AMR][1000 genomes]
rs28590097	1.00[AMR][1000 genomes]
rs28611007	1.00[AMR][1000 genomes]
rs28649591	1.00[AMR][1000 genomes]
rs28695752	1.00[AMR][1000 genomes]
rs28744399	1.00[AMR][1000 genomes]
rs28770194	1.00[AMR][1000 genomes]
rs73151521	1.00[AMR][1000 genomes]
rs9992612	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56815800-56875000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:56816200-56839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:56816200-56846600	Weak transcription	Right Ventricle	heart
4	chr4:56816200-56873400	Weak transcription	Pancreas	Pancrea
5	chr4:56816200-56884200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr4:56816200-56887800	Weak transcription	Gastric	stomach
7	chr4:56816400-56866000	Weak transcription	Spleen	Spleen
8	chr4:56816400-56890800	Weak transcription	Colon Smooth Muscle	Colon
9	chr4:56816600-56851800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr4:56816600-56852000	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:56816600-56865800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:56816600-56890600	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:56816600-56896400	Weak transcription	Fetal Heart	heart
14	chr4:56816800-56865800	Weak transcription	Small Intestine	intestine
15	chr4:56816800-56869800	Weak transcription	HepG2	liver
16	chr4:56817400-56885400	Weak transcription	NHDF-Ad	bronchial
17	chr4:56817800-56846200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr4:56817800-56854600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:56818200-56853800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr4:56818800-56841800	Strong transcription	Primary T helper cells fromperipheralblood	blood
21	chr4:56819000-56897400	Weak transcription	HSMMtube	muscle
22	chr4:56819200-56859600	Weak transcription	Fetal Kidney	kidney
23	chr4:56819200-56890600	Weak transcription	NHLF	lung
24	chr4:56820000-56841600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr4:56820600-56892400	Weak transcription	Hela-S3	cervix
26	chr4:56822200-56849800	Weak transcription	Fetal Brain Male	brain
27	chr4:56822200-56873600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr4:56822400-56845000	Weak transcription	K562	blood
29	chr4:56822400-56865800	Weak transcription	Psoas Muscle	Psoas
30	chr4:56823600-56893800	Weak transcription	HMEC	breast
31	chr4:56824000-56846600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:56824600-56839600	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr4:56824600-56846800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr4:56824600-56846800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr4:56825200-56851600	Weak transcription	Lung	lung
36	chr4:56825200-56865800	Weak transcription	Aorta	Aorta
37	chr4:56825400-56845800	Weak transcription	Fetal Muscle Leg	muscle
38	chr4:56825600-56870000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:56826400-56845800	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:56826800-56849400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr4:56827000-56846000	Weak transcription	HUVEC	blood vessel
42	chr4:56827800-56854200	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr4:56828200-56854600	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr4:56828200-56884200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:56828600-56851800	Weak transcription	Fetal Intestine Small	intestine
46	chr4:56828800-56852000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:56829000-56845600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:56829200-56881400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:56829400-56839600	Weak transcription	HSMM	muscle
50	chr4:56829400-56865600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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