Variant report

Variant	rs17089175
Chromosome Location	chr4:69083031-69083032
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10006271	1.00[AMR][1000 genomes]
rs10014409	1.00[AMR][1000 genomes]
rs10015034	0.87[YRI][hapmap]
rs10017863	0.87[YRI][hapmap]
rs10020493	1.00[AMR][1000 genomes]
rs10021670	1.00[AMR][1000 genomes]
rs10024896	1.00[AMR][1000 genomes]
rs11942344	1.00[AMR][1000 genomes]
rs11942378	1.00[AMR][1000 genomes]
rs17089201	1.00[AMR][1000 genomes]
rs17089205	1.00[AMR][1000 genomes]
rs17089208	1.00[AMR][1000 genomes]
rs2319801	1.00[AMR][1000 genomes]
rs2319802	1.00[AMR][1000 genomes]
rs28403934	1.00[AMR][1000 genomes]
rs28408073	1.00[AMR][1000 genomes]
rs28410736	1.00[AMR][1000 genomes]
rs28515192	1.00[AMR][1000 genomes]
rs28539319	1.00[AMR][1000 genomes]
rs28578038	1.00[AMR][1000 genomes]
rs28582887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28648604	1.00[AMR][1000 genomes]
rs28674479	1.00[AMR][1000 genomes]
rs28701106	1.00[AMR][1000 genomes]
rs28731370	1.00[AMR][1000 genomes]
rs2874082	1.00[AMR][1000 genomes]
rs28873764	1.00[AMR][1000 genomes]
rs35341131	1.00[AMR][1000 genomes]
rs4259127	1.00[AMR][1000 genomes]
rs4307039	1.00[AMR][1000 genomes]
rs4307040	1.00[AMR][1000 genomes]
rs4423941	1.00[AMR][1000 genomes]
rs4431295	1.00[AMR][1000 genomes]
rs4569822	1.00[AMR][1000 genomes]
rs4607294	1.00[AMR][1000 genomes]
rs6823555	1.00[AMR][1000 genomes]
rs9312194	1.00[AMR][1000 genomes]
rs953289	1.00[AMR][1000 genomes]
rs9985745	1.00[AMR][1000 genomes]
rs9985874	1.00[AMR][1000 genomes]
rs9991837	0.85[YRI][hapmap]
rs9994398	1.00[AMR][1000 genomes]
rs9998367	1.00[AMR][1000 genomes]
rs9999835	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008084	chr4:68797598-69482831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv537131	chr4:68797598-69482831	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1812438	chr4:68943858-69154222	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1806586	chr4:68943858-69592846	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv461546	chr4:69049643-69223057	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv594506	chr4:69049643-69223057	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:69080400-69084200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:69082000-69083800	Enhancers	iPS-20b Cell Line	embryonic stem cell
3	chr4:69082000-69084200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:69082200-69084200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr4:69082800-69083200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr4:69083000-69083800	Enhancers	HUES6 Cell Line	embryonic stem cell

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