Variant report

Variant	rs17090785
Chromosome Location	chr14:56431590-56431591
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17090771	1.00[AMR][1000 genomes]
rs60800881	1.00[AMR][1000 genomes]
rs72622478	1.00[EUR][1000 genomes]
rs73276081	1.00[AMR][1000 genomes]
rs74051593	1.00[AMR][1000 genomes]
rs74054312	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901966	chr14:56160904-56436203	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv901977	chr14:56213392-56492996	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv34106	chr14:56346245-56550642	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1042669	chr14:56407744-56435077	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv1036163	chr14:56413023-56435077	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56425000-56435600	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:56425400-56431800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:56431000-56431800	Enhancers	Fetal Brain Female	brain
4	chr14:56431000-56432000	Enhancers	Fetal Lung	lung
5	chr14:56431000-56432800	Weak transcription	Fetal Stomach	stomach
6	chr14:56431000-56433800	Enhancers	Fetal Brain Male	brain
7	chr14:56431000-56438800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:56431200-56432000	Enhancers	Fetal Kidney	kidney
9	chr14:56431200-56440800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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