Variant report

Variant	rs17091807
Chromosome Location	chr14:35806663-35806664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35759879..35772372-chr14:35797131..35808840,38	MCF-7	breast:
2	chr14:35342362..35344896-chr14:35804305..35806891,2	MCF-7	breast:
3	chr14:35802795..35808702-chr14:35869869..35875069,9	K562	blood:
4	chr14:35806042..35806669-chr14:35825358..35825929,2	Hela-S3	cervix:
5	chr14:35311937..35314117-chr14:35804578..35807465,2	MCF-7	breast:
6	chr14:35806177..35808702-chr14:35872439..35875223,3	K562	blood:
7	chr14:35804902..35807934-chr14:35810651..35813744,3	K562	blood:
8	chr14:35787677..35790283-chr14:35804787..35806837,2	MCF-7	breast:
9	chr14:35451847..35453370-chr14:35805990..35808420,2	MCF-7	breast:
10	chr14:35799325..35802587-chr14:35803466..35807668,8	K562	blood:
11	chr14:35793722..35795928-chr14:35804588..35807090,2	K562	blood:
12	chr14:35781062..35784992-chr14:35805086..35807917,3	MCF-7	breast:
13	chr14:35773332..35776624-chr14:35804894..35807958,4	MCF-7	breast:
14	chr14:35801385..35810310-chr14:35830739..35838852,15	K562	blood:
15	chr14:35759417..35767612-chr14:35799689..35808998,23	MCF-7	breast:
16	chr14:35589625..35592428-chr14:35805813..35807817,3	MCF-7	breast:
17	chr14:35778351..35785006-chr14:35799640..35807255,11	MCF-7	breast:
18	chr14:35701570..35704183-chr14:35804617..35807506,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100890	Chromatin interaction
ENSG00000265530	Chromatin interaction
ENSG00000258790	Chromatin interaction
ENSG00000100902	Chromatin interaction
ENSG00000100883	Chromatin interaction
ENSG00000092020	Chromatin interaction
ENSG00000258738	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000258860	Chromatin interaction
ENSG00000198604	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10047949	0.85[ASN][1000 genomes]
rs10131625	0.85[ASN][1000 genomes]
rs10132920	0.85[ASN][1000 genomes]
rs10134308	0.85[ASN][1000 genomes]
rs10136978	0.85[ASN][1000 genomes]
rs10137019	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10142846	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10144857	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10146691	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10147645	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10149823	1.00[JPT][hapmap]
rs1064248	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11844031	0.88[ASN][1000 genomes]
rs11845183	0.88[ASN][1000 genomes]
rs11845364	0.85[ASN][1000 genomes]
rs11848309	1.00[JPT][hapmap]
rs11849461	0.88[ASN][1000 genomes]
rs11851820	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs11852178	0.88[ASN][1000 genomes]
rs12100582	0.85[ASN][1000 genomes]
rs12100980	0.85[ASN][1000 genomes]
rs12436351	0.88[ASN][1000 genomes]
rs17103111	0.85[ASN][1000 genomes]
rs17103147	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17103166	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs17456067	1.00[JPT][hapmap]
rs1884715	0.82[ASN][1000 genomes]
rs2145622	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2277459	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2277461	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2415278	0.85[ASN][1000 genomes]
rs2415284	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28470932	0.85[ASN][1000 genomes]
rs28504476	0.82[ASN][1000 genomes]
rs28595436	0.85[ASN][1000 genomes]
rs28665705	0.85[ASN][1000 genomes]
rs28708376	0.85[ASN][1000 genomes]
rs28736779	0.85[ASN][1000 genomes]
rs2899832	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs55907319	0.85[ASN][1000 genomes]
rs58064181	0.88[ASN][1000 genomes]
rs60940685	0.88[ASN][1000 genomes]
rs6571709	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7148424	0.85[ASN][1000 genomes]
rs7149602	0.85[ASN][1000 genomes]
rs7153807	0.85[ASN][1000 genomes]
rs7154637	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7155335	0.92[ASN][1000 genomes]
rs7218	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs73239026	0.82[ASN][1000 genomes]
rs73239030	0.82[ASN][1000 genomes]
rs73239072	0.85[ASN][1000 genomes]
rs73239074	0.85[ASN][1000 genomes]
rs73240720	0.88[ASN][1000 genomes]
rs73240721	0.88[ASN][1000 genomes]
rs74043875	0.88[ASN][1000 genomes]
rs743226	0.85[ASN][1000 genomes]
rs743227	0.85[ASN][1000 genomes]
rs7493705	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8004236	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8005261	0.88[ASN][1000 genomes]
rs8007822	0.85[ASN][1000 genomes]
rs8009666	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs8010905	0.85[ASN][1000 genomes]
rs8016140	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs876996	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs9646144	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
5	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
6	nsv456205	chr14:35772940-35826370	ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv564318	chr14:35772940-35826370	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	esv1829386	chr14:35789740-35845927	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
9	nsv518090	chr14:35802483-35840241	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35800000-35815000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr14:35800600-35807000	Enhancers	Primary hematopoietic stem cells	blood
3	chr14:35800600-35807200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr14:35800600-35807400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr14:35800600-35814400	Enhancers	Placenta	Placenta
6	chr14:35800800-35807000	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr14:35800800-35812200	Enhancers	Fetal Thymus	thymus
8	chr14:35800800-35813800	Enhancers	Lung	lung
9	chr14:35801000-35810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr14:35801200-35807600	Enhancers	Spleen	Spleen
11	chr14:35801400-35810200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:35802800-35809000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr14:35802800-35810200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:35803000-35807400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:35803000-35810400	Enhancers	Liver	Liver
16	chr14:35803200-35807600	Enhancers	Left Ventricle	heart
17	chr14:35803400-35809000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr14:35803600-35808000	Weak transcription	Thymus	Thymus
19	chr14:35803600-35808600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr14:35803600-35808600	Weak transcription	GM12878-XiMat	blood
21	chr14:35803600-35808800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr14:35803800-35807400	Enhancers	Right Atrium	heart
23	chr14:35803800-35808600	Weak transcription	Primary T cells from cord blood	blood
24	chr14:35803800-35808800	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr14:35803800-35808800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr14:35804000-35808200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr14:35804000-35808600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr14:35804000-35808600	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr14:35804400-35807200	Enhancers	Monocytes-CD14+_RO01746	blood
30	chr14:35804400-35807400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr14:35804400-35807400	Enhancers	Duodenum Smooth Muscle	Duodenum
32	chr14:35804400-35807400	Enhancers	Gastric	stomach
33	chr14:35804400-35807400	Enhancers	Pancreas	Pancrea
34	chr14:35804400-35807400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
35	chr14:35804400-35807400	Enhancers	NHDF-Ad	bronchial
36	chr14:35804400-35807600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:35804400-35807600	Enhancers	Colon Smooth Muscle	Colon
38	chr14:35804600-35807000	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr14:35804600-35807000	Enhancers	Fetal Stomach	stomach
40	chr14:35804600-35807000	Flanking Active TSS	A549	lung
41	chr14:35804600-35807000	Enhancers	HUVEC	blood vessel
42	chr14:35804600-35807200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:35804600-35807200	Enhancers	Brain Hippocampus Middle	brain
44	chr14:35804600-35807200	Enhancers	Fetal Muscle Leg	muscle
45	chr14:35804600-35807400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr14:35804600-35807400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr14:35804600-35807400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr14:35804600-35807400	Enhancers	Brain Substantia Nigra	brain
49	chr14:35804600-35807400	Enhancers	NHLF	lung
50	chr14:35804600-35810800	Enhancers	Esophagus	oesophagus

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