Variant report

Variant	rs17093570
Chromosome Location	chr14:65604937-65604938
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs59724943	1.00[AMR][1000 genomes]
rs74056659	1.00[AMR][1000 genomes]
rs74056669	1.00[AMR][1000 genomes]
rs74056671	1.00[AMR][1000 genomes]
rs74056672	1.00[AMR][1000 genomes]
rs74056676	1.00[AMR][1000 genomes]
rs74056679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832816	chr14:65473244-65644645	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	esv1833060	chr14:65594460-65607642	Enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv989058	chr14:65601785-65607798	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3530651	chr14:65604499-65609897	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv564910	chr14:65604728-65607752	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv564911	chr14:65604728-65607817	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65601600-65605400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr14:65604200-65605000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr14:65604400-65605000	Enhancers	HMEC	breast
4	chr14:65604400-65605000	Enhancers	NHEK	skin
5	chr14:65604400-65605000	Enhancers	Osteobl	bone
6	chr14:65604400-65605200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:65604400-65605200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr14:65604400-65605200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr14:65604400-65605400	Enhancers	Fetal Intestine Small	intestine
10	chr14:65604600-65605400	Enhancers	Fetal Intestine Large	intestine
11	chr14:65604800-65605200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:65604800-65605400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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