Variant report

Variant	rs17093750
Chromosome Location	chr14:72414804-72414805
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1009017	0.88[JPT][hapmap]
rs11158920	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158921	1.00[CEU][hapmap];0.88[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158926	0.84[JPT][hapmap]
rs11158927	1.00[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs11620690	0.93[CEU][hapmap];0.80[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs11622507	0.84[EUR][1000 genomes]
rs11623492	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs11623535	0.88[JPT][hapmap]
rs11625937	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs11627768	1.00[CEU][hapmap];0.93[JPT][hapmap];0.84[EUR][1000 genomes]
rs11628133	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs11628574	1.00[CEU][hapmap]
rs12148043	1.00[CEU][hapmap];0.83[JPT][hapmap];0.82[EUR][1000 genomes]
rs12433721	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12437172	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1476745	0.83[JPT][hapmap]
rs17104493	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17105346	1.00[CEU][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs17105566	0.93[CEU][hapmap];0.80[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs17105606	0.93[CEU][hapmap];0.84[JPT][hapmap];0.82[EUR][1000 genomes]
rs17105690	0.93[CEU][hapmap];0.84[JPT][hapmap]
rs17768361	0.82[JPT][hapmap]
rs2067856	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2159457	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2190864	0.89[JPT][hapmap]
rs2238277	1.00[CEU][hapmap];0.87[CHB][hapmap];0.84[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2238280	0.87[CHB][hapmap]
rs2332705	0.82[EUR][1000 genomes]
rs3784055	1.00[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs3784056	1.00[CEU][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes]
rs3784058	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4243640	0.88[JPT][hapmap]
rs4350510	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs4354860	0.88[JPT][hapmap]
rs4899409	1.00[CEU][hapmap];0.87[CHB][hapmap];0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4899412	0.88[JPT][hapmap]
rs4902958	1.00[CEU][hapmap];0.88[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902966	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs56743778	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58890880	0.82[EUR][1000 genomes]
rs59631889	0.82[EUR][1000 genomes]
rs60503142	0.84[EUR][1000 genomes]
rs72734102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72735921	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72735923	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72735952	0.84[EUR][1000 genomes]
rs72735955	0.84[EUR][1000 genomes]
rs72735956	0.84[EUR][1000 genomes]
rs728497	1.00[CEU][hapmap];0.87[CHB][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7493353	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7494103	1.00[CEU][hapmap]
rs8013467	0.88[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72410600-72425400	Weak transcription	Left Ventricle	heart
2	chr14:72411800-72415600	Strong transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:72412600-72415000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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