Variant report

Variant	rs17097905
Chromosome Location	chr1:76484466-76484467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17097903	0.83[AMR][1000 genomes]
rs17097917	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17097930	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17097933	0.90[AFR][1000 genomes]
rs17097991	0.86[YRI][hapmap];0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17098000	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs61771294	0.91[AFR][1000 genomes]
rs72988522	0.95[AFR][1000 genomes]
rs7545248	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76484000-76484600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:76484000-76484800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr1:76484000-76485000	Enhancers	Placenta Amnion	Placenta Amnion
4	chr1:76484200-76484800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:76484200-76484800	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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