Variant report

Variant	rs17098508
Chromosome Location	chr14:32558902-32558903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32551628..32554297-chr14:32555841..32559167,3	MCF-7	breast:
2	chr14:32554925..32557855-chr14:32558604..32561592,5	K562	blood:
3	chr14:32555927..32560391-chr14:32562569..32565184,4	K562	blood:
4	chr14:32555927..32560391-chr14:32562569..32566454,5	K562	blood:
5	chr14:32545781..32547471-chr14:32556657..32559505,2	K562	blood:

Variant related genes	Relation type
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10134888	1.00[EUR][1000 genomes]
rs10143850	1.00[EUR][1000 genomes]
rs11849454	1.00[EUR][1000 genomes]
rs12100687	1.00[EUR][1000 genomes]
rs12100688	1.00[EUR][1000 genomes]
rs12100768	1.00[EUR][1000 genomes]
rs12100930	1.00[EUR][1000 genomes]
rs12100931	1.00[ASW][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12101226	1.00[EUR][1000 genomes]
rs28765407	1.00[EUR][1000 genomes]
rs28802314	1.00[EUR][1000 genomes]
rs28845852	1.00[EUR][1000 genomes]
rs57218277	1.00[EUR][1000 genomes]
rs58280109	1.00[EUR][1000 genomes]
rs59021515	1.00[EUR][1000 genomes]
rs59609395	1.00[EUR][1000 genomes]
rs7140954	1.00[ASW][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7148967	1.00[MEX][hapmap]
rs7152059	1.00[ASW][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7157301	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74041589	1.00[EUR][1000 genomes]
rs74041590	1.00[EUR][1000 genomes]
rs74041597	1.00[EUR][1000 genomes]
rs74041599	1.00[EUR][1000 genomes]
rs74041600	1.00[EUR][1000 genomes]
rs8012001	0.95[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.85[YRI][hapmap];1.00[EUR][1000 genomes]
rs8021655	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564182	chr14:32110519-32584337	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv1046526	chr14:32110537-32567426	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32547600-32571400	Weak transcription	Spleen	Spleen
2	chr14:32548000-32559800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr14:32548000-32586200	Weak transcription	Lung	lung
4	chr14:32548000-32597400	Weak transcription	Esophagus	oesophagus
5	chr14:32548200-32559800	Weak transcription	Placenta	Placenta
6	chr14:32548200-32560000	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr14:32548400-32559600	Weak transcription	Primary B cells from peripheral blood	blood
8	chr14:32548400-32560800	Weak transcription	Fetal Thymus	thymus
9	chr14:32548400-32569600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr14:32548400-32571200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr14:32548600-32560000	Weak transcription	Primary B cells from cord blood	blood
12	chr14:32548600-32562000	Weak transcription	HUVEC	blood vessel
13	chr14:32548600-32564600	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:32548600-32584000	Weak transcription	Fetal Stomach	stomach
15	chr14:32548800-32560000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr14:32548800-32560000	Weak transcription	Adipose Nuclei	Adipose
17	chr14:32548800-32562000	Weak transcription	Fetal Brain Female	brain
18	chr14:32548800-32570600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr14:32548800-32571600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr14:32548800-32572800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:32549000-32559800	Weak transcription	Primary T cells from cord blood	blood
22	chr14:32549000-32559800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr14:32549000-32559800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr14:32549000-32559800	Weak transcription	Fetal Kidney	kidney
25	chr14:32549000-32574000	Weak transcription	Aorta	Aorta
26	chr14:32549200-32560600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr14:32549200-32570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:32549200-32571600	Weak transcription	K562	blood
29	chr14:32549400-32559800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr14:32550200-32559200	Weak transcription	Dnd41	blood
31	chr14:32550200-32560000	Weak transcription	Osteobl	bone
32	chr14:32550200-32560200	Weak transcription	NHDF-Ad	bronchial
33	chr14:32550200-32563600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr14:32550400-32559600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr14:32550400-32559800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr14:32550600-32559800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:32550600-32560000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr14:32551000-32574000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr14:32551400-32559000	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr14:32552000-32560000	Weak transcription	Fetal Muscle Trunk	muscle
41	chr14:32552000-32560000	Weak transcription	Fetal Muscle Leg	muscle
42	chr14:32552000-32573600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr14:32552000-32596800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:32552200-32560800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr14:32552200-32561400	Weak transcription	Brain Germinal Matrix	brain
46	chr14:32552200-32562000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:32552400-32559800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr14:32552800-32559800	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr14:32552800-32560000	Weak transcription	Psoas Muscle	Psoas
50	chr14:32553200-32567600	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links