Variant report

Variant	rs17098779
Chromosome Location	chr12:63419237-63419238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:63407510..63410577-chr12:63417588..63419660,3	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1026096	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1249935	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12813083	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12814605	0.89[AFR][1000 genomes]
rs12821413	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821849	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12829134	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098568	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098575	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098581	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17098689	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098761	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098763	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098774	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098789	1.00[ASN][1000 genomes]
rs17098794	1.00[ASN][1000 genomes]
rs17098802	0.82[EUR][1000 genomes]
rs1731661	1.00[ASN][1000 genomes]
rs17739095	1.00[ASN][1000 genomes]
rs2464118	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2840070	1.00[ASN][1000 genomes]
rs2884542	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34203667	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35910451	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67784802	1.00[ASN][1000 genomes]
rs67994077	1.00[ASN][1000 genomes]
rs699591	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs699593	1.00[ASN][1000 genomes]
rs699615	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs699618	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap]
rs71450600	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465172	1.00[ASN][1000 genomes]
rs71465180	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71465181	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771974	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs771976	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs772538	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs772541	1.00[ASN][1000 genomes]
rs960592	0.82[EUR][1000 genomes]
rs9971730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3415227	chr12:63228121-63591615	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63418600-63419400	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr12:63418600-63419600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr12:63418800-63419400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:63418800-63419400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:63418800-63419400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:63418800-63419600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:63419000-63419400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr12:63419200-63419400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr12:63419200-63419400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr12:63419200-63421200	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr12:63419200-63421400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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