Variant report

Variant	rs17098983
Chromosome Location	chr14:32868873-32868874
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32864947..32867000-chr14:32868325..32869881,2	MCF-7	breast:
2	chr14:32848788..32851684-chr14:32867343..32869134,2	MCF-7	breast:
3	chr14:32854265..32856331-chr14:32866756..32868974,2	MCF-7	breast:
4	chr14:32866943..32869881-chr14:32876415..32878628,2	MCF-7	breast:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10141597	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10149776	0.83[AFR][1000 genomes]
rs10149930	0.94[YRI][hapmap];0.81[AFR][1000 genomes]
rs17098967	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1805261	0.85[GIH][hapmap]
rs28452279	1.00[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs28547895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3784179	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[GIH][hapmap];0.81[JPT][hapmap]
rs72666176	0.82[EUR][1000 genomes]
rs8015220	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv976820	chr14:32860301-32873799	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32865400-32871400	Enhancers	Brain Anterior Caudate	brain
2	chr14:32865600-32876400	Weak transcription	Fetal Brain Male	brain
3	chr14:32866000-32869000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr14:32866200-32869400	Enhancers	Brain Substantia Nigra	brain
5	chr14:32866400-32869200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr14:32866400-32869400	Enhancers	Hela-S3	cervix
7	chr14:32866400-32876200	Weak transcription	Left Ventricle	heart
8	chr14:32866800-32869200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr14:32866800-32871200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr14:32867000-32870800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr14:32867200-32870800	Enhancers	HSMM	muscle
12	chr14:32867600-32869200	Weak transcription	Psoas Muscle	Psoas
13	chr14:32867600-32873000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr14:32867600-32876600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr14:32867600-32882800	Weak transcription	Fetal Brain Female	brain
16	chr14:32867800-32869000	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:32867800-32869000	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr14:32867800-32869200	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:32867800-32869200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:32867800-32871200	Weak transcription	Fetal Heart	heart
21	chr14:32867800-32872600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:32867800-32875800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:32868000-32870000	Weak transcription	NHDF-Ad	bronchial
24	chr14:32868000-32870000	Weak transcription	Osteobl	bone
25	chr14:32868000-32871000	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:32868000-32872800	Weak transcription	NH-A	brain
27	chr14:32868000-32872800	Weak transcription	NHEK	skin
28	chr14:32868000-32873400	Weak transcription	Colon Smooth Muscle	Colon
29	chr14:32868000-32874400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:32868000-32876000	Weak transcription	Brain Angular Gyrus	brain
31	chr14:32868400-32869800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:32868400-32869800	Weak transcription	HMEC	breast
33	chr14:32868400-32872800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr14:32868600-32869000	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr14:32868800-32869200	Weak transcription	Brain Cingulate Gyrus	brain
36	chr14:32868800-32869400	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr14:32868800-32873600	Weak transcription	Brain Hippocampus Middle	brain
38	chr14:32868800-32874000	Weak transcription	Brain Germinal Matrix	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links