Variant report

Variant	rs17099047
Chromosome Location	chr14:32888249-32888250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10444700	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17408253	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17408295	0.90[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17486543	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17486760	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2383301	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2891192	0.91[CEU][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57050663	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59004359	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32876800-32895800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:32880200-32889000	Enhancers	Brain Cingulate Gyrus	brain
3	chr14:32882600-32888800	Enhancers	Brain Hippocampus Middle	brain
4	chr14:32884800-32888800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr14:32885400-32889600	Enhancers	Brain Substantia Nigra	brain
6	chr14:32885800-32889400	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr14:32886000-32888400	Enhancers	Brain Angular Gyrus	brain
8	chr14:32886200-32888400	Enhancers	Rectal Smooth Muscle	rectum
9	chr14:32886200-32888800	Enhancers	Fetal Heart	heart
10	chr14:32886200-32889000	Enhancers	HSMM	muscle
11	chr14:32886400-32891200	Weak transcription	Fetal Brain Female	brain
12	chr14:32886600-32888600	Enhancers	Muscle Satellite Cultured Cells	--
13	chr14:32886600-32888800	Enhancers	Hela-S3	cervix
14	chr14:32886600-32889600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:32887000-32888600	Enhancers	Brain Germinal Matrix	brain
16	chr14:32887000-32889200	Enhancers	Brain Anterior Caudate	brain
17	chr14:32887200-32888800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:32887200-32891000	Active TSS	Right Ventricle	heart
19	chr14:32887600-32889000	Enhancers	HSMMtube	muscle
20	chr14:32887600-32889400	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr14:32887800-32888400	Enhancers	HUVEC	blood vessel
22	chr14:32887800-32888600	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:32887800-32889600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:32887800-32891400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:32887800-32895800	Weak transcription	Left Ventricle	heart
26	chr14:32887800-32901800	Weak transcription	Ovary	ovary
27	chr14:32888000-32888600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr14:32888000-32891000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:32888000-32891000	Weak transcription	NH-A	brain
30	chr14:32888000-32891400	Weak transcription	Osteobl	bone

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