Variant report

Variant	rs17099069
Chromosome Location	chr14:32896479-32896480
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10444700	0.90[ASN][1000 genomes]
rs12432844	1.00[JPT][hapmap];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17408253	0.82[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]
rs17408295	0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs17486543	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs17486760	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2383301	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs2891192	0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs55882211	1.00[AFR][1000 genomes]
rs57050663	0.82[ASN][1000 genomes]
rs59004359	0.90[ASN][1000 genomes]
rs8014419	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758352	chr14:32858480-33016442	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2759978	chr14:32858480-33016442	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32887800-32901800	Weak transcription	Ovary	ovary
2	chr14:32891800-32899400	Weak transcription	Osteobl	bone
3	chr14:32892000-32902800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:32895200-32897600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr14:32895200-32902200	Enhancers	Brain Hippocampus Middle	brain
6	chr14:32895400-32899000	Enhancers	Fetal Heart	heart
7	chr14:32895600-32896600	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:32895600-32897400	Enhancers	Brain Substantia Nigra	brain
9	chr14:32895600-32898200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr14:32895800-32896600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr14:32895800-32896600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr14:32895800-32896800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr14:32895800-32896800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:32895800-32896800	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr14:32895800-32896800	Enhancers	Fetal Brain Male	brain
16	chr14:32895800-32896800	Enhancers	Left Ventricle	heart
17	chr14:32895800-32897000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:32895800-32897200	Enhancers	Duodenum Smooth Muscle	Duodenum
19	chr14:32895800-32897200	Enhancers	Fetal Lung	lung
20	chr14:32895800-32897400	Enhancers	Brain Anterior Caudate	brain
21	chr14:32895800-32897800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr14:32895800-32898400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:32895800-32898600	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr14:32895800-32899200	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr14:32896000-32896600	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr14:32896000-32896600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr14:32896000-32896600	Flanking Active TSS	Brain Germinal Matrix	brain
28	chr14:32896000-32896600	Enhancers	Esophagus	oesophagus
29	chr14:32896000-32896800	Enhancers	H1 Cell Line	embryonic stem cell
30	chr14:32896000-32896800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr14:32896000-32897200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:32896000-32897200	Enhancers	Rectal Smooth Muscle	rectum
33	chr14:32896000-32897400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr14:32896000-32897400	Enhancers	iPS-20b Cell Line	embryonic stem cell
35	chr14:32896000-32898200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
36	chr14:32896000-32898600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:32896200-32896600	Enhancers	Right Ventricle	heart
38	chr14:32896200-32897200	Weak transcription	NH-A	brain
39	chr14:32896200-32899200	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr14:32896200-32902000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:32896400-32896600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:32896400-32896600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr14:32896400-32896600	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr14:32896400-32897400	Enhancers	Colon Smooth Muscle	Colon
45	chr14:32896400-32897600	Enhancers	Fetal Brain Female	brain
46	chr14:32896400-32898400	Enhancers	Brain Angular Gyrus	brain
47	chr14:32896400-32900400	Enhancers	Brain Cingulate Gyrus	brain

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