Variant report

Variant	rs17099320
Chromosome Location	chr14:33048094-33048095
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33045417..33048110-chr14:34259925..34261939,2	MCF-7	breast:
2	chr14:33046699..33049313-chr14:33061563..33064082,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10138218	0.86[ASN][1000 genomes]
rs10483414	0.87[CEU][hapmap]
rs10735738	0.86[ASN][1000 genomes]
rs11156754	0.86[ASN][1000 genomes]
rs11626762	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12717222	0.89[ASN][1000 genomes]
rs17099309	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17099324	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17099326	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1956212	1.00[CHD][hapmap];0.85[JPT][hapmap];0.93[ASN][1000 genomes]
rs1956219	0.86[ASN][1000 genomes]
rs3784203	0.86[ASN][1000 genomes]
rs4981992	0.87[CHD][hapmap];0.86[ASN][1000 genomes]
rs4981993	0.86[ASN][1000 genomes]
rs61981363	0.89[ASN][1000 genomes]
rs61983021	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6571540	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs6571541	0.86[ASN][1000 genomes]
rs7146517	0.89[ASN][1000 genomes]
rs7154753	0.89[ASN][1000 genomes]
rs7157328	0.86[ASN][1000 genomes]
rs7157533	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs7157744	1.00[CHD][hapmap];0.86[ASN][1000 genomes]
rs7160156	1.00[CHD][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs73255099	0.96[ASN][1000 genomes]
rs8017249	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs979494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
3	chr14:33042400-33053400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:33042400-33058200	Weak transcription	Left Ventricle	heart
5	chr14:33046000-33048400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:33046000-33063000	Weak transcription	Ovary	ovary
7	chr14:33046200-33053400	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:33046200-33057000	Weak transcription	Brain Anterior Caudate	brain
9	chr14:33046200-33058200	Weak transcription	Right Ventricle	heart
10	chr14:33046600-33061800	Weak transcription	Fetal Heart	heart
11	chr14:33047000-33048200	Enhancers	GM12878-XiMat	blood
12	chr14:33047400-33050800	Weak transcription	Brain Angular Gyrus	brain
13	chr14:33047600-33048200	Enhancers	Brain Germinal Matrix	brain
14	chr14:33047600-33058200	Weak transcription	HSMMtube	muscle

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