Variant report

Variant	rs17099489
Chromosome Location	chr14:33202079-33202080
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33201447..33204366-chr14:33204778..33206779,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000151320	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2239646	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2300830	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs3784209	0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs58036433	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58972912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61693948	0.89[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7140269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7157733	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428624	chr14:33065571-33214223	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv832765	chr14:33188170-33367348	Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33192400-33207200	Weak transcription	Left Ventricle	heart
2	chr14:33194600-33202800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:33194600-33225600	Weak transcription	Aorta	Aorta
4	chr14:33194800-33202600	Enhancers	Brain Substantia Nigra	brain
5	chr14:33194800-33222200	Weak transcription	Fetal Muscle Leg	muscle
6	chr14:33195000-33204600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr14:33195200-33205600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:33195200-33209200	Weak transcription	Colon Smooth Muscle	Colon
9	chr14:33195800-33202200	Weak transcription	HSMMtube	muscle
10	chr14:33196200-33208000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:33198600-33214800	Weak transcription	Right Ventricle	heart
12	chr14:33199000-33218000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr14:33199200-33202400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr14:33199400-33205400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:33200800-33204600	Weak transcription	Fetal Heart	heart
16	chr14:33200800-33205000	Weak transcription	Fetal Brain Female	brain
17	chr14:33201000-33202200	Weak transcription	Brain Germinal Matrix	brain
18	chr14:33201000-33204800	Weak transcription	Brain Cingulate Gyrus	brain
19	chr14:33201600-33202600	Enhancers	Brain Anterior Caudate	brain
20	chr14:33201800-33202600	Enhancers	Brain Hippocampus Middle	brain
21	chr14:33201800-33202800	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr14:33202000-33202400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr14:33202000-33202600	Enhancers	Brain Angular Gyrus	brain

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