Variant report

Variant	rs17100426
Chromosome Location	chr1:94942747-94942748
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94941332..94943153-chr1:94956990..94959761,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1624081	1.00[MEX][hapmap]
rs6683092	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871764	chr1:94917402-95004084	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv531881	chr1:94937444-95053785	Weak transcription Bivalent Enhancer Strong transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94913800-94974200	Weak transcription	Psoas Muscle	Psoas
2	chr1:94914200-94951800	Weak transcription	Brain Angular Gyrus	brain
3	chr1:94914800-94985800	Weak transcription	NHLF	lung
4	chr1:94915400-94993200	Weak transcription	HSMMtube	muscle
5	chr1:94915800-94955400	Weak transcription	NHDF-Ad	bronchial
6	chr1:94915800-94956600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:94916000-94957200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr1:94916000-94969600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr1:94916000-94970000	Weak transcription	Ovary	ovary
10	chr1:94916000-94970000	Weak transcription	Spleen	Spleen
11	chr1:94916000-94973800	Weak transcription	Pancreas	Pancrea
12	chr1:94916000-94993000	Weak transcription	Esophagus	oesophagus
13	chr1:94916200-94968400	Weak transcription	Gastric	stomach
14	chr1:94916200-94971600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr1:94916200-94974200	Weak transcription	Lung	lung
16	chr1:94917200-94964400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:94917800-94971800	Weak transcription	NHEK	skin
18	chr1:94917800-95000800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:94918000-94957000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:94919000-94942800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr1:94920600-94948400	Weak transcription	Small Intestine	intestine
22	chr1:94921000-94957800	Weak transcription	Brain Germinal Matrix	brain
23	chr1:94923600-94956400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr1:94923600-94956600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr1:94923800-94948000	Weak transcription	NH-A	brain
26	chr1:94923800-95000400	Weak transcription	Aorta	Aorta
27	chr1:94924000-94947000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr1:94924000-94964400	Weak transcription	GM12878-XiMat	blood
29	chr1:94924800-94968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr1:94926600-94950400	Weak transcription	Primary B cells from cord blood	blood
31	chr1:94929000-94954200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr1:94929000-94957200	Weak transcription	Colonic Mucosa	Colon
33	chr1:94929400-94947000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr1:94929400-94980200	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr1:94929600-94955400	Weak transcription	Fetal Heart	heart
36	chr1:94929600-94985400	Weak transcription	Fetal Brain Female	brain
37	chr1:94929800-94944800	Weak transcription	A549	lung
38	chr1:94929800-94945200	Weak transcription	Stomach Mucosa	stomach
39	chr1:94930800-94945200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr1:94930800-94974000	Weak transcription	H1 Cell Line	embryonic stem cell
41	chr1:94931000-94942800	Weak transcription	Fetal Stomach	stomach
42	chr1:94931000-94948000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr1:94931000-94952400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr1:94931000-94956600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr1:94931000-94957400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr1:94931200-94948200	Weak transcription	Osteobl	bone
47	chr1:94931600-94946800	Weak transcription	Brain Hippocampus Middle	brain
48	chr1:94931600-94948000	Weak transcription	Brain Anterior Caudate	brain
49	chr1:94931600-94948200	Weak transcription	Hela-S3	cervix
50	chr1:94931600-94957200	Weak transcription	Stomach Smooth Muscle	stomach

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