Variant report
| Variant | rs17102412 |
|---|---|
| Chromosome Location | chr14:65594992-65594993 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | CEBPB | chr14:65594886-65595161 | Hela-S3 | cervix: | n/a | n/a |
| 2 | CEBPB | chr14:65594866-65595174 | HepG2 | liver: | n/a | n/a |
| 3 | CEBPB | chr14:65594844-65595157 | IMR90 | lung: | n/a | n/a |
| 4 | CEBPB | chr14:65594863-65595165 | A549 | lung: | n/a | n/a |
| 5 | CEBPB | chr14:65594972-65595112 | K562 | blood: | n/a | n/a |
| 6 | CEBPB | chr14:65594884-65595151 | MCF-7 | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| RNU2-14P | TF binding region |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11844303 | 1.00[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11849905 | 0.88[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1256502 | 1.00[EUR][1000 genomes] |
| rs28448351 | 1.00[EUR][1000 genomes] |
| rs34601568 | 1.00[MEX][hapmap] |
| rs57140560 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57787929 | 1.00[EUR][1000 genomes] |
| rs7149107 | 1.00[EUR][1000 genomes] |
| rs7160535 | 1.00[EUR][1000 genomes] |
| rs73270897 | 1.00[EUR][1000 genomes] |
| rs73272693 | 1.00[EUR][1000 genomes] |
| rs74056658 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74056660 | 1.00[EUR][1000 genomes] |
| rs9944027 | 1.00[MEX][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832816 | chr14:65473244-65644645 | Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | esv1833060 | chr14:65594460-65607642 | Enhancers Weak transcription Flanking Active TSS | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
