Variant report

Variant	rs17102508
Chromosome Location	chr14:65677356-65677357
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs55867601	0.86[ASN][1000 genomes]
rs55890029	0.86[ASN][1000 genomes]
rs58250564	0.86[ASN][1000 genomes]
rs61989800	0.86[ASN][1000 genomes]
rs61989801	0.86[ASN][1000 genomes]
rs7141109	0.86[ASN][1000 genomes]
rs7153564	0.86[ASN][1000 genomes]
rs7159202	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832817	chr14:65637069-65810406	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	14 gene(s)	inside rSNPs	diseases
2	nsv564932	chr14:65660502-65691545	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv564933	chr14:65667546-65710580	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65670200-65678400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:65671000-65677400	Enhancers	Fetal Thymus	thymus
3	chr14:65671600-65678800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr14:65671800-65678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr14:65671800-65678800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:65672000-65678400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr14:65672200-65681400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65672800-65691400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:65674000-65678800	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:65674000-65678800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr14:65674000-65680000	Enhancers	Dnd41	blood
12	chr14:65674000-65691400	Weak transcription	Thymus	Thymus
13	chr14:65674200-65678600	Enhancers	Primary B cells from cord blood	blood
14	chr14:65674800-65677400	Enhancers	K562	blood
15	chr14:65675200-65677400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr14:65675200-65678600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:65675400-65678600	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr14:65675400-65678600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr14:65675600-65677400	Weak transcription	Stomach Mucosa	stomach
20	chr14:65675600-65678600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:65675600-65680800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr14:65675600-65681400	Weak transcription	Spleen	Spleen
23	chr14:65675600-65687000	Weak transcription	Fetal Intestine Small	intestine
24	chr14:65675800-65687000	Weak transcription	Fetal Intestine Large	intestine
25	chr14:65676200-65677400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr14:65676200-65678600	Enhancers	Primary hematopoietic stem cells	blood
27	chr14:65676200-65678600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr14:65676400-65678600	Enhancers	HSMM	muscle
29	chr14:65676400-65678800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr14:65676600-65678400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr14:65676600-65678600	Enhancers	Primary T cells from cord blood	blood
32	chr14:65676600-65678800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:65676600-65678800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:65676600-65678800	Enhancers	HUVEC	blood vessel
35	chr14:65676800-65677400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr14:65676800-65677600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr14:65676800-65677600	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:65676800-65678200	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr14:65676800-65678600	Enhancers	Brain Anterior Caudate	brain
40	chr14:65676800-65678600	Enhancers	NH-A	brain
41	chr14:65676800-65678600	Enhancers	Osteobl	bone
42	chr14:65676800-65678800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:65676800-65678800	Enhancers	HMEC	breast
44	chr14:65677000-65677400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:65677000-65677400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:65677000-65677400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
47	chr14:65677000-65677600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr14:65677000-65677600	Flanking Active TSS	GM12878-XiMat	blood
49	chr14:65677000-65677800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr14:65677000-65678000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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