Variant report

Variant	rs17102656
Chromosome Location	chr14:65876428-65876429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65685385..65700060-chr14:65874568..65884730,76	MCF-7	breast:
2	chr14:65682951..65699539-chr14:65874873..65882779,51	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255002	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10129221	1.00[YRI][hapmap]
rs10129828	1.00[YRI][hapmap]
rs10130270	1.00[YRI][hapmap]
rs10131095	1.00[YRI][hapmap]
rs10131559	1.00[MEX][hapmap]
rs10135430	1.00[YRI][hapmap]
rs10135555	1.00[YRI][hapmap]
rs10136600	1.00[YRI][hapmap]
rs10137961	1.00[YRI][hapmap]
rs10142126	1.00[YRI][hapmap]
rs10142520	1.00[YRI][hapmap]
rs10143537	1.00[YRI][hapmap]
rs10150033	1.00[YRI][hapmap]
rs12147506	0.93[EUR][1000 genomes]
rs12147773	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12147814	1.00[EUR][1000 genomes]
rs17102765	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs17102767	1.00[ASW][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap]
rs17102769	1.00[MEX][hapmap];1.00[YRI][hapmap]
rs2152376	1.00[YRI][hapmap]
rs4383066	1.00[EUR][1000 genomes]
rs59938364	1.00[EUR][1000 genomes]
rs7350748	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9323458	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832818	chr14:65706859-65882320	Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
5	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
6	nsv510639	chr14:65853883-65884315	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65864400-65878400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr14:65869000-65877800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr14:65870400-65877600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr14:65870400-65877600	Weak transcription	NHDF-Ad	bronchial
5	chr14:65870600-65877800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:65870800-65878200	Weak transcription	Ovary	ovary
7	chr14:65871000-65877400	Weak transcription	Primary B cells from cord blood	blood
8	chr14:65873000-65877800	Weak transcription	Primary T cells from cord blood	blood
9	chr14:65874400-65877600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
10	chr14:65875000-65877200	Enhancers	Brain Hippocampus Middle	brain
11	chr14:65875200-65877800	Weak transcription	Stomach Mucosa	stomach
12	chr14:65875600-65878000	Enhancers	Brain Substantia Nigra	brain
13	chr14:65875800-65877400	Enhancers	Brain Cingulate Gyrus	brain
14	chr14:65876000-65877800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr14:65876200-65876800	Enhancers	Brain Angular Gyrus	brain
16	chr14:65876400-65876600	Enhancers	Brain Anterior Caudate	brain
17	chr14:65876400-65876800	Enhancers	Duodenum Mucosa	Duodenum
18	chr14:65876400-65877000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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