Variant report

Variant	rs17102836
Chromosome Location	chr14:66127092-66127093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66125185..66127124-chr14:66130505..66132106,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10129187	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10129472	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10129732	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130560	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10133167	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133902	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10133903	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10135594	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10135934	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10136412	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10136763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10143822	1.00[EUR][1000 genomes]
rs10145993	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10145996	1.00[CEU][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10146179	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10150052	0.83[ASN][1000 genomes]
rs10151921	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10162379	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162474	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10162506	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220303	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10220304	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483779	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10483784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12588029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13379147	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13379229	1.00[CEU][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17102686	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17102757	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17102844	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17102896	0.88[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs17102920	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17779571	0.93[EUR][1000 genomes]
rs1813030	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1950559	1.00[CEU][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1953419	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958562	1.00[CEU][hapmap];0.92[JPT][hapmap];0.93[EUR][1000 genomes]
rs1959146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1959147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1959148	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2092915	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2411814	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411818	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2411819	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28373922	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28390075	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28427101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28430347	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28452027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28694288	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28695252	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28823043	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28830595	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28871950	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898817	1.00[CEU][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2898819	1.00[CEU][hapmap];0.89[CHB][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3783707	1.00[CEU][hapmap];0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4516142	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs45549535	0.93[EUR][1000 genomes]
rs57638372	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58170348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59970730	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61987818	0.83[ASN][1000 genomes]
rs6573623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140251	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7141326	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7145319	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7145834	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7148401	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7151690	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7160505	1.00[CEU][hapmap];0.88[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73270603	0.93[ASN][1000 genomes]
rs73270608	0.91[ASN][1000 genomes]
rs73284130	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73284201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8003664	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8012058	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8014146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8015947	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8017901	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9323462	0.92[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9323464	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9972109	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66081400-66142200	Weak transcription	Thymus	Thymus
2	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
3	chr14:66092800-66141000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr14:66099000-66135200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr14:66099200-66135800	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr14:66099200-66144000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr14:66105000-66143400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr14:66105000-66149600	Weak transcription	Fetal Thymus	thymus
10	chr14:66105000-66157400	Weak transcription	Primary hematopoietic stem cells	blood
11	chr14:66105200-66135600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr14:66105200-66136000	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr14:66113400-66141400	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr14:66114000-66135600	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr14:66116200-66135000	Weak transcription	Dnd41	blood
16	chr14:66120200-66135000	Weak transcription	Primary B cells from cord blood	blood
17	chr14:66123200-66133800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr14:66125200-66130200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr14:66125200-66130400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr14:66125400-66130400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr14:66125600-66135800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:66125600-66138200	Weak transcription	NHLF	lung
23	chr14:66125600-66146600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:66125600-66157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:66126400-66130600	Enhancers	Stomach Mucosa	stomach
26	chr14:66126400-66146800	Weak transcription	Brain Cingulate Gyrus	brain
27	chr14:66126800-66129600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr14:66126800-66135400	Weak transcription	GM12878-XiMat	blood
29	chr14:66126800-66153400	Weak transcription	Aorta	Aorta

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