Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10039939	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10040035	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10043087	0.90[AMR][1000 genomes]
rs10056757	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10062578	0.90[AMR][1000 genomes]
rs10066359	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10072356	0.90[AMR][1000 genomes]
rs10076979	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10477281	0.90[AMR][1000 genomes]
rs10477283	0.90[AMR][1000 genomes]
rs10515555	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs10515556	0.90[AMR][1000 genomes]
rs13436854	0.90[AMR][1000 genomes]
rs1347158	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28362039	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28368285	0.99[AFR][1000 genomes]
rs28599550	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs28889604	0.90[AMR][1000 genomes]
rs713327	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9324987	0.90[AMR][1000 genomes]
rs951551	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883004	chr5:144945649-145068001	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv883005	chr5:144945649-145107586	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145028400-145060400	Weak transcription	Pancreas	Pancrea
2	chr5:145033200-145051400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:145034200-145046400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr5:145037000-145041200	Weak transcription	Aorta	Aorta
5	chr5:145039000-145042200	Enhancers	Fetal Brain Female	brain
6	chr5:145039600-145042000	Enhancers	Fetal Brain Male	brain
7	chr5:145039600-145042400	Enhancers	Fetal Lung	lung
8	chr5:145039800-145042400	Enhancers	Fetal Stomach	stomach
9	chr5:145040000-145042200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr5:145040400-145042200	Enhancers	Stomach Smooth Muscle	stomach
11	chr5:145040600-145042000	Enhancers	Colon Smooth Muscle	Colon
12	chr5:145040800-145042200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:145040800-145042400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr5:145041000-145041400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr5:145041000-145041800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr5:145041000-145041800	Enhancers	Ovary	ovary

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