Variant report

Variant	rs17104011
Chromosome Location	chr12:67969861-67969862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17103908	1.00[AMR][1000 genomes]
rs17104137	1.00[AMR][1000 genomes]
rs17104140	1.00[AMR][1000 genomes]
rs59436268	1.00[AMR][1000 genomes]
rs74100350	1.00[AMR][1000 genomes]
rs74100354	1.00[AMR][1000 genomes]
rs74100361	1.00[AMR][1000 genomes]
rs74100364	1.00[AMR][1000 genomes]
rs74100366	1.00[AMR][1000 genomes]
rs74100376	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430007	chr12:67947726-68241938	Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:67964200-67971600	Weak transcription	Aorta	Aorta
2	chr12:67967800-67973000	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links