Variant report

Variant	rs17105233
Chromosome Location	chr14:37233892-37233893
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1325528	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs1367035	1.00[CEU][hapmap];0.94[CHB][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1429849	0.95[CEU][hapmap];0.94[CHB][hapmap]
rs17105308	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17105311	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17105314	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17105347	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs17105367	1.00[CEU][hapmap];0.94[CHB][hapmap]
rs17105394	0.91[CEU][hapmap];0.95[CHB][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41434649	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41490345	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4523840	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59662346	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60809272	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61996676	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6571762	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37217400-37234200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:37225800-37234000	Weak transcription	Esophagus	oesophagus
3	chr14:37227600-37236600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr14:37227600-37236800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:37229000-37236400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr14:37232400-37236600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr14:37232600-37234200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr14:37232600-37234600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr14:37232800-37234000	Enhancers	NHEK	skin
10	chr14:37232800-37234200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:37233400-37234400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:37233600-37234400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr14:37233600-37236600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:37233800-37234000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr14:37233800-37234000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr14:37233800-37234200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr14:37233800-37234800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:37233800-37236800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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