Variant report

Variant	rs17105258
Chromosome Location	chr14:37237268-37237269
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:37225583..37228610-chr14:37234821..37238583,4	MCF-7	breast:
2	chr14:37237060..37238683-chr14:37243797..37246601,2	K562	blood:
3	chr14:37236787..37238777-chr14:37239104..37242247,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1429846	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105080	1.00[TSI][hapmap]
rs17105317	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105336	1.00[YRI][hapmap]
rs17105375	0.82[YRI][hapmap]
rs17105389	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105392	1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17105423	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17105467	1.00[EUR][1000 genomes]
rs1950353	1.00[EUR][1000 genomes]
rs2415362	1.00[EUR][1000 genomes]
rs28633981	1.00[AMR][1000 genomes]
rs55733140	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7153250	1.00[TSI][hapmap]
rs7158254	1.00[TSI][hapmap]
rs74044987	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045000	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74045208	1.00[AMR][1000 genomes]
rs8007647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1037952	chr14:36670484-37294692	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv542042	chr14:36670484-37294692	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
4	nsv1053685	chr14:36915643-37245920	Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37234600-37238000	Weak transcription	Esophagus	oesophagus
2	chr14:37235000-37238400	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr14:37235400-37238400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:37236000-37237800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr14:37236400-37237800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:37236400-37238000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr14:37236400-37238000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:37236400-37238000	Enhancers	HMEC	breast
9	chr14:37236400-37238400	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr14:37236600-37238000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr14:37236600-37238000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:37236600-37238200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr14:37236600-37238200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr14:37236600-37238400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr14:37236600-37238400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:37236600-37238400	Enhancers	K562	blood
17	chr14:37236800-37237400	Enhancers	H9 Cell Line	embryonic stem cell
18	chr14:37236800-37237400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:37236800-37237400	Bivalent Enhancer	Fetal Heart	heart
20	chr14:37236800-37237400	Enhancers	Placenta Amnion	Placenta Amnion
21	chr14:37236800-37237600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
22	chr14:37236800-37237600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:37236800-37237800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr14:37236800-37237800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:37236800-37238000	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr14:37236800-37238400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr14:37237000-37237400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr14:37237000-37237400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr14:37237000-37237400	Enhancers	Fetal Muscle Leg	muscle
30	chr14:37237000-37237600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr14:37237000-37237600	Flanking Active TSS	NHEK	skin

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