Variant report

Variant	rs17105690
Chromosome Location	chr14:72472184-72472185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1009017	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11158920	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs11158921	0.93[CEU][hapmap];0.86[CHB][hapmap]
rs11158926	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs11158927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11620690	1.00[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap]
rs11623492	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11623535	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11625937	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs11627768	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap]
rs11628133	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11628574	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs12148043	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12433721	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs1476745	0.88[JPT][hapmap]
rs17093750	0.93[CEU][hapmap];0.84[JPT][hapmap]
rs17105346	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap]
rs17105566	1.00[CEU][hapmap];0.93[CHB][hapmap];0.89[JPT][hapmap]
rs17105606	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17768361	0.88[JPT][hapmap]
rs2052015	0.94[JPT][hapmap]
rs2067856	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2159457	0.92[CEU][hapmap]
rs2190864	0.83[JPT][hapmap]
rs2238277	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs2238280	0.85[CHB][hapmap]
rs3784055	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs3784056	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[JPT][hapmap]
rs3784058	0.93[CEU][hapmap];0.89[JPT][hapmap]
rs4243640	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4350510	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs4354860	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4899409	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs4899412	0.92[CHB][hapmap];0.94[JPT][hapmap]
rs4902958	0.93[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap]
rs4902966	0.93[CHB][hapmap];0.94[JPT][hapmap]
rs728497	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7494103	1.00[CEU][hapmap];0.94[JPT][hapmap]
rs8013467	0.92[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72470800-72474200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72471000-72472800	Weak transcription	Cortex derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links