Variant report

Variant	rs17105692
Chromosome Location	chr14:37387006-37387007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12431972	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12587486	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1367033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1367034	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1429840	0.83[ASW][hapmap];1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17105665	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap];0.89[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs17105720	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17105756	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs17177892	0.91[EUR][1000 genomes]
rs2021932	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs712400	0.88[JPT][hapmap]
rs712404	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7145237	0.83[ASW][hapmap];1.00[CEU][hapmap];0.88[TSI][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7147105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7150167	0.83[ASW][hapmap];1.00[CEU][hapmap];0.81[JPT][hapmap];0.88[TSI][hapmap];0.81[YRI][hapmap]
rs8015456	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs848702	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs861924	1.00[CEU][hapmap];0.84[LWK][hapmap];0.92[MKK][hapmap];0.85[TSI][hapmap]
rs861925	1.00[CEU][hapmap]
rs861928	1.00[CEU][hapmap];0.81[JPT][hapmap];0.82[MKK][hapmap];0.88[TSI][hapmap]
rs9635194	0.92[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.87[CHD][hapmap];0.81[JPT][hapmap];0.89[MEX][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17105692	MEST	trans	lymphoblastoid	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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