Variant report

Variant	rs17105757
Chromosome Location	chr14:77873497-77873498
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77840795..77844789-chr14:77870809..77874889,5	MCF-7	breast:
2	chr14:77872277..77875027-chr14:77918456..77921340,3	MCF-7	breast:
3	chr14:77868441..77870840-chr14:77872580..77875267,2	MCF-7	breast:
4	chr14:77867912..77869685-chr14:77872621..77875120,2	MCF-7	breast:
5	chr14:77872257..77874007-chr14:78173034..78174621,2	MCF-7	breast:
6	chr14:77795091..77797469-chr14:77871259..77873894,2	MCF-7	breast:
7	chr14:77872637..77877422-chr14:77877699..77881765,7	K562	blood:
8	chr14:77785202..77790958-chr14:77870163..77875663,11	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000100580	Chromatin interaction
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction
ENSG00000119705	Chromatin interaction
ENSG00000151445	Chromatin interaction
ENSG00000100583	Chromatin interaction
ENSG00000100601	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12881282	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105746	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17105759	0.86[AFR][1000 genomes]
rs61729322	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61729326	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1362	chr14:77853202-77898605	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77859600-77886200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:77867600-77875600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr14:77872200-77873800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr14:77872200-77874200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr14:77872200-77874600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
6	chr14:77872400-77873600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:77872400-77874000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr14:77872400-77874200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr14:77872400-77888600	Weak transcription	Pancreas	Pancrea
10	chr14:77872600-77874000	Enhancers	GM12878-XiMat	blood
11	chr14:77872600-77874400	Flanking Active TSS	Primary hematopoietic stem cells	blood
12	chr14:77872800-77874200	Flanking Active TSS	K562	blood
13	chr14:77873200-77874000	Enhancers	Primary T cells from cord blood	blood
14	chr14:77873200-77874000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr14:77873200-77874200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr14:77873400-77873600	Weak transcription	Primary B cells from cord blood	blood
17	chr14:77873400-77873800	Enhancers	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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