Variant report

Variant	rs17105763
Chromosome Location	chr14:37424412-37424413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr14:37424376-37425180	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37411507..37413747-chr14:37421697..37425494,3	K562	blood:

Variant related genes	Relation type
MIR4503	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1156170	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11844605	0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs12887020	0.95[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1367030	0.82[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1429842	0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1429843	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs1429844	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105714	0.81[CHB][hapmap]
rs17105735	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105737	0.93[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs17105755	0.94[CHB][hapmap];0.83[JPT][hapmap];0.92[ASN][1000 genomes]
rs2022718	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2022719	0.83[EUR][1000 genomes]
rs2022720	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022721	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59381342	0.92[ASN][1000 genomes]
rs61989472	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141518	0.94[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs7156730	0.93[CHB][hapmap];0.92[ASN][1000 genomes]
rs8015869	0.81[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047290	chr14:36564568-37445157	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
2	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1050254	chr14:37400173-37445157	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	esv2830246	chr14:37417440-37424770	Enhancers Weak transcription	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37413800-37437400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37414200-37424800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:37420400-37425200	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:37421000-37424800	Enhancers	HSMMtube	muscle
5	chr14:37421200-37425000	Enhancers	HSMM	muscle
6	chr14:37422600-37425000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:37423600-37426600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr14:37423600-37428400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr14:37424200-37424800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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