Variant report

Variant	rs17105791
Chromosome Location	chr5:146344847-146344848
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10077240	0.92[GIH][hapmap];0.85[LWK][hapmap];0.88[MEX][hapmap];0.84[MKK][hapmap];0.97[TSI][hapmap]
rs1031915	0.93[TSI][hapmap]
rs1031916	0.90[TSI][hapmap];0.81[AMR][1000 genomes]
rs12523317	0.84[JPT][hapmap]
rs13182446	0.83[MEX][hapmap]
rs13183391	0.89[GIH][hapmap]
rs1383167	0.92[GIH][hapmap];0.84[JPT][hapmap];0.85[LWK][hapmap];0.94[MEX][hapmap];0.86[MKK][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1383168	0.89[GIH][hapmap];0.94[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1842343	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2054528	0.89[GIH][hapmap]
rs2400234	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2400236	1.00[ASW][hapmap];0.89[CEU][hapmap];0.86[GIH][hapmap];0.84[JPT][hapmap];0.94[MEX][hapmap];0.88[MKK][hapmap];0.82[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4705454	0.89[CEU][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56672131	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61088380	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62373342	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62377581	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62377606	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6881673	0.84[JPT][hapmap]
rs922585	1.00[ASW][hapmap];0.89[CEU][hapmap];0.82[CHD][hapmap];0.92[GIH][hapmap];0.84[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9325031	0.89[GIH][hapmap];0.84[JPT][hapmap]
rs9325032	0.89[GIH][hapmap]
rs997979	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015804	chr5:146066000-146788233	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv537915	chr5:146066000-146788233	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv519847	chr5:146166378-146812647	Bivalent/Poised TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv599938	chr5:146169511-146806365	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv869238	chr5:146179403-146787986	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146327400-146345000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:146341600-146345000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr5:146342600-146345000	Weak transcription	Brain Substantia Nigra	brain
4	chr5:146342600-146345400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr5:146342800-146345200	Weak transcription	Brain Angular Gyrus	brain
6	chr5:146342800-146347200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr5:146343000-146345400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr5:146343000-146345400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:146343800-146345400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr5:146343800-146345400	Weak transcription	Ovary	ovary
11	chr5:146344000-146345200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:146344200-146347800	Enhancers	Brain Hippocampus Middle	brain
13	chr5:146344600-146345400	Weak transcription	Colon Smooth Muscle	Colon
14	chr5:146344800-146346200	Enhancers	Brain Anterior Caudate	brain

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