Variant report

Variant	rs17105883
Chromosome Location	chr14:37463542-37463543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:78397137..78398843-chr14:37461199..37464085,2	MCF-7	breast:
2	chr14:37457602..37460019-chr14:37462703..37465213,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10129948	0.96[ASN][1000 genomes]
rs10130430	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10131507	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10132205	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10137636	0.92[EUR][1000 genomes]
rs10141660	0.96[ASN][1000 genomes]
rs10148776	0.90[EUR][1000 genomes]
rs11850139	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050275	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs17105840	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs17105858	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105860	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17105951	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs2022584	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2022585	0.90[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]
rs2022727	0.95[CEU][hapmap];0.93[EUR][1000 genomes]
rs2022730	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2056355	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2139746	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2145131	0.96[ASN][1000 genomes]
rs2180599	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28414995	0.94[ASN][1000 genomes]
rs28540719	0.86[ASN][1000 genomes]
rs61989484	0.94[ASN][1000 genomes]
rs6571771	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs6571772	0.95[CEU][hapmap];0.85[EUR][1000 genomes]
rs7142715	0.95[ASN][1000 genomes]
rs7143069	0.96[ASN][1000 genomes]
rs7147216	0.96[ASN][1000 genomes]
rs7156230	0.86[ASN][1000 genomes]
rs751202	0.90[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs8013390	0.87[EUR][1000 genomes]
rs8019355	0.92[EUR][1000 genomes]
rs8021342	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909015	1.00[CHB][hapmap];0.89[JPT][hapmap];0.86[ASN][1000 genomes]
rs911008	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs925999	1.00[CHB][hapmap];0.89[JPT][hapmap];0.93[ASN][1000 genomes]
rs9805891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37446200-37465800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:37458000-37466000	Weak transcription	HSMM	muscle
3	chr14:37459400-37465600	Weak transcription	NHDF-Ad	bronchial
4	chr14:37462400-37465800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr14:37462600-37465400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr14:37462600-37465400	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:37462800-37465200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:37463200-37463600	Enhancers	Fetal Heart	heart
9	chr14:37463400-37463600	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr14:37463400-37464200	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links