Variant report

Variant	rs17105957
Chromosome Location	chr14:37487132-37487133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37476086..37478169-chr14:37485943..37487587,2	MCF-7	breast:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1012199	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs10133673	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10141752	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10142021	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10151092	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs10220604	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10459480	0.93[CHB][hapmap];0.82[JPT][hapmap]
rs10483485	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12050463	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs12889634	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17105991	0.99[AFR][1000 genomes]
rs17105999	0.93[AFR][1000 genomes]
rs17106020	0.83[AFR][1000 genomes]
rs17106031	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17106189	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17106209	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17106216	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17106275	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106290	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106291	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106309	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs17106333	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs17106393	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs17106396	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs17106404	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs17106433	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs17841015	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1884221	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1884775	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1884777	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1950376	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1950814	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955761	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1955762	1.00[EUR][1000 genomes]
rs1955763	0.93[CHB][hapmap];0.83[JPT][hapmap]
rs1956423	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1956424	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1998121	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2078246	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs2415379	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2415380	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2415388	0.92[CHB][hapmap]
rs60717098	0.85[AFR][1000 genomes]
rs61192357	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7140991	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7151524	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7160129	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs73256292	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8008478	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs8014186	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs8019489	0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37467000-37488800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr14:37486600-37487600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links