Variant report

Variant	rs17105986
Chromosome Location	chr14:37495148-37495149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10143620	0.80[CEU][hapmap]
rs17105982	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs17767595	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2022724	0.89[CEU][hapmap];0.90[YRI][hapmap];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2022725	0.91[CEU][hapmap];0.94[TSI][hapmap]
rs56354546	1.00[ASN][1000 genomes]
rs57372401	1.00[ASN][1000 genomes]
rs57753622	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7142003	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9322973	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17105986	PPP2R3C	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37492600-37496600	Enhancers	Fetal Heart	heart
2	chr14:37494800-37503400	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr14:37495000-37495200	Enhancers	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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