Variant report

Variant	rs17106029
Chromosome Location	chr14:37503880-37503881
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37498607..37500171-chr14:37503819..37505728,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13329063	1.00[CEU][hapmap]
rs17106078	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17106088	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17106194	0.83[YRI][hapmap]
rs58096842	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58496598	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7140385	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7140991	1.00[CEU][hapmap]
rs7160919	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7161715	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73258226	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs74045265	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37500400-37505200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:37500400-37505200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:37503400-37504600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:37503600-37504000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:37503600-37504000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:37503600-37504000	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:37503600-37505000	Enhancers	Aorta	Aorta
8	chr14:37503600-37506200	Enhancers	HSMMtube	muscle
9	chr14:37503600-37506200	Enhancers	NH-A	brain
10	chr14:37503600-37506400	Enhancers	Osteobl	bone
11	chr14:37503600-37507000	Enhancers	HUVEC	blood vessel
12	chr14:37503800-37504200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:37503800-37504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:37503800-37504600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:37503800-37505000	Enhancers	Fetal Muscle Leg	muscle
16	chr14:37503800-37505800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:37503800-37506400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:37503800-37506400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:37503800-37506400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:37503800-37506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:37503800-37506600	Enhancers	HSMM	muscle
22	chr14:37503800-37507400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:37503800-37507600	Enhancers	NHDF-Ad	bronchial

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