Variant report

Variant	rs17106031
Chromosome Location	chr14:37503981-37503982
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:37498607..37500171-chr14:37503819..37505728,2	MCF-7	breast:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs1012199	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10133673	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10136238	0.86[ASN][1000 genomes]
rs10141752	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10142021	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10151092	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs10220604	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10459480	0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10483485	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs12050463	0.93[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes]
rs12889634	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17105957	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17106189	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17106209	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17106216	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17106275	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs17106290	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106291	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs17106309	0.90[CHB][hapmap];0.92[JPT][hapmap]
rs17106333	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs17106393	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17106396	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17106404	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17106433	0.93[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs17841015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1884221	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1884775	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1884777	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1950367	1.00[AFR][1000 genomes]
rs1950376	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1950814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1955760	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1955761	0.93[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs1955763	0.93[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs1956423	0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1956424	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1998121	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2078246	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs2415379	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2415380	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2415388	0.92[CHB][hapmap]
rs28517624	0.86[ASN][1000 genomes]
rs28593311	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4356385	0.82[ASN][1000 genomes]
rs61192357	0.85[ASN][1000 genomes]
rs61293305	1.00[AFR][1000 genomes]
rs7140991	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7151524	0.93[CHB][hapmap];0.93[JPT][hapmap]
rs7160129	0.93[CHB][hapmap];0.86[JPT][hapmap]
rs73256292	0.85[ASN][1000 genomes]
rs74045463	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8008478	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs8014186	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs8019489	0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534288	chr14:37254539-37697745	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1036201	chr14:37498841-37542041	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1037719	chr14:37498841-37546359	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv526786	chr14:37499904-37537352	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:37500400-37505200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr14:37500400-37505200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:37503400-37504600	Enhancers	Muscle Satellite Cultured Cells	--
4	chr14:37503600-37504000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:37503600-37504000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:37503600-37504000	Enhancers	Fetal Muscle Trunk	muscle
7	chr14:37503600-37505000	Enhancers	Aorta	Aorta
8	chr14:37503600-37506200	Enhancers	HSMMtube	muscle
9	chr14:37503600-37506200	Enhancers	NH-A	brain
10	chr14:37503600-37506400	Enhancers	Osteobl	bone
11	chr14:37503600-37507000	Enhancers	HUVEC	blood vessel
12	chr14:37503800-37504200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr14:37503800-37504600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:37503800-37504600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr14:37503800-37505000	Enhancers	Fetal Muscle Leg	muscle
16	chr14:37503800-37505800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr14:37503800-37506400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:37503800-37506400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr14:37503800-37506400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:37503800-37506600	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr14:37503800-37506600	Enhancers	HSMM	muscle
22	chr14:37503800-37507400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:37503800-37507600	Enhancers	NHDF-Ad	bronchial

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