Variant report

Variant	rs17107164
Chromosome Location	chr14:70110268-70110269
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70109436..70111234-chr14:70149871..70151669,2	MCF-7	breast:
2	chr14:70110167..70112208-chr14:70116437..70117943,2	MCF-7	breast:
3	chr14:70108653..70111894-chr14:70113537..70117255,5	K562	blood:
4	chr14:70093575..70095940-chr14:70109923..70112166,2	K562	blood:
5	chr14:70107632..70111411-chr14:70113640..70118051,5	MCF-7	breast:
6	chr14:70106221..70108070-chr14:70109431..70111866,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1275832	1.00[AMR][1000 genomes]
rs17107165	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17107166	1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2783512	1.00[AMR][1000 genomes]
rs3784142	1.00[MEX][hapmap]
rs3784148	0.84[MKK][hapmap]
rs55954221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56192566	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57105079	1.00[AMR][1000 genomes]
rs61636155	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060221	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060225	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060232	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060235	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060238	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060242	0.87[AFR][1000 genomes]
rs74060243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74060250	1.00[AMR][1000 genomes]
rs762049	1.00[MEX][hapmap]
rs9671513	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70104800-70125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:70105000-70113800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr14:70105200-70115400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:70105400-70114000	Weak transcription	Fetal Stomach	stomach
5	chr14:70105600-70111400	Weak transcription	Fetal Lung	lung
6	chr14:70105600-70115600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:70105800-70113800	Weak transcription	Osteobl	bone
8	chr14:70105800-70114600	Weak transcription	Placenta	Placenta
9	chr14:70105800-70115600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr14:70106200-70113200	ZNF genes & repeats	GM12878-XiMat	blood
11	chr14:70106600-70115000	Weak transcription	Fetal Kidney	kidney
12	chr14:70107600-70110400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr14:70108000-70113800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr14:70108200-70114000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:70108400-70121200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:70109000-70110600	Enhancers	Right Atrium	heart
17	chr14:70109000-70114600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr14:70109000-70121400	Enhancers	Stomach Mucosa	stomach
19	chr14:70109200-70110400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr14:70109200-70112200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:70109400-70110400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr14:70109400-70110400	Enhancers	Gastric	stomach
23	chr14:70109400-70110400	Enhancers	Lung	lung
24	chr14:70109400-70110400	Enhancers	Pancreas	Pancrea
25	chr14:70109400-70110400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr14:70109400-70110400	Enhancers	Right Ventricle	heart
27	chr14:70109400-70110800	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr14:70109400-70112000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
29	chr14:70109400-70112000	Enhancers	Duodenum Mucosa	Duodenum
30	chr14:70109400-70112000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr14:70109400-70112200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr14:70109400-70112400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:70109400-70115400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr14:70109400-70121200	Enhancers	Small Intestine	intestine
35	chr14:70109600-70110400	Enhancers	Thymus	Thymus
36	chr14:70109600-70110600	Enhancers	Fetal Muscle Leg	muscle
37	chr14:70109600-70110600	Enhancers	Left Ventricle	heart
38	chr14:70109600-70110800	Enhancers	Adipose Nuclei	Adipose
39	chr14:70109600-70110800	Enhancers	Colon Smooth Muscle	Colon
40	chr14:70109600-70111000	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr14:70109600-70111000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr14:70109600-70111000	Enhancers	HepG2	liver
43	chr14:70109600-70111200	Enhancers	Primary T cells from cord blood	blood
44	chr14:70109600-70111400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr14:70109600-70111400	Enhancers	Hela-S3	cervix
46	chr14:70109600-70111600	Enhancers	Fetal Heart	heart
47	chr14:70109600-70111800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr14:70109600-70111800	Enhancers	Liver	Liver
49	chr14:70109600-70112000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr14:70109600-70112000	Enhancers	Brain Anterior Caudate	brain

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