Variant report

Variant	rs17107167
Chromosome Location	chr14:70113906-70113907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:70113887..70117052-chr14:70117331..70121263,5	K562	blood:
2	chr14:70075878..70078294-chr14:70112470..70114213,2	K562	blood:
3	chr14:70108653..70111894-chr14:70113537..70117255,5	K562	blood:
4	chr14:70075910..70078866-chr14:70112750..70114338,2	MCF-7	breast:
5	chr14:70049658..70051914-chr14:70113200..70114742,2	K562	blood:
6	chr14:70107632..70111411-chr14:70113640..70118051,5	MCF-7	breast:
7	chr14:70049075..70051914-chr14:70112777..70114742,2	K562	blood:
8	chr14:70104798..70107619-chr14:70112192..70114043,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000100647	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs17107169	0.85[AFR][1000 genomes]
rs55634075	0.84[AFR][1000 genomes]
rs57153309	0.85[AFR][1000 genomes]
rs58291537	0.92[AFR][1000 genomes]
rs58658815	1.00[AFR][1000 genomes]
rs60146581	0.92[AFR][1000 genomes]
rs61389585	0.84[AFR][1000 genomes]
rs61606958	0.84[AFR][1000 genomes]
rs61710255	0.84[AFR][1000 genomes]
rs74060216	0.84[AFR][1000 genomes]
rs74060217	0.92[AFR][1000 genomes]
rs74060224	0.92[AFR][1000 genomes]
rs74060230	0.92[AFR][1000 genomes]
rs74060254	1.00[AFR][1000 genomes]
rs74060255	1.00[AFR][1000 genomes]
rs74060260	0.84[AFR][1000 genomes]
rs74060266	0.84[AFR][1000 genomes]
rs74060268	0.84[AFR][1000 genomes]
rs74060273	0.84[AFR][1000 genomes]
rs74060276	0.84[AFR][1000 genomes]
rs74060279	0.84[AFR][1000 genomes]
rs74060287	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70104800-70125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:70105200-70115400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr14:70105400-70114000	Weak transcription	Fetal Stomach	stomach
4	chr14:70105600-70115600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:70105800-70114600	Weak transcription	Placenta	Placenta
6	chr14:70105800-70115600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:70106600-70115000	Weak transcription	Fetal Kidney	kidney
8	chr14:70108200-70114000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr14:70108400-70121200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr14:70109000-70114600	Weak transcription	Fetal Muscle Trunk	muscle
11	chr14:70109000-70121400	Enhancers	Stomach Mucosa	stomach
12	chr14:70109400-70115400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr14:70109400-70121200	Enhancers	Small Intestine	intestine
14	chr14:70109600-70121200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr14:70109800-70115200	Weak transcription	Fetal Thymus	thymus
16	chr14:70109800-70125400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr14:70110000-70115200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr14:70110000-70122800	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr14:70110200-70121400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr14:70110400-70114000	Weak transcription	Gastric	stomach
21	chr14:70110400-70114000	Weak transcription	Lung	lung
22	chr14:70110400-70114800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:70110400-70115200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:70110400-70115200	Weak transcription	Thymus	Thymus
25	chr14:70110400-70115400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr14:70110400-70116000	Weak transcription	Esophagus	oesophagus
27	chr14:70110400-70121400	Enhancers	Primary B cells from peripheral blood	blood
28	chr14:70110400-70124600	Weak transcription	Fetal Brain Female	brain
29	chr14:70110600-70114000	Weak transcription	Brain Substantia Nigra	brain
30	chr14:70110600-70114000	Weak transcription	Fetal Muscle Leg	muscle
31	chr14:70110600-70114000	Weak transcription	HUVEC	blood vessel
32	chr14:70110600-70115000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr14:70110600-70115000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr14:70110600-70115400	Weak transcription	Aorta	Aorta
35	chr14:70110800-70114000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr14:70110800-70114200	Weak transcription	Stomach Smooth Muscle	stomach
37	chr14:70110800-70115000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:70111000-70114000	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr14:70111000-70114000	Weak transcription	HepG2	liver
40	chr14:70111200-70115000	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr14:70111600-70114000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr14:70111600-70114200	Weak transcription	Fetal Heart	heart
43	chr14:70111800-70114000	Weak transcription	Fetal Lung	lung
44	chr14:70111800-70114000	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:70111800-70114000	Weak transcription	Right Ventricle	heart
46	chr14:70111800-70114200	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr14:70112000-70114000	Weak transcription	Adipose Nuclei	Adipose
48	chr14:70112000-70114000	Weak transcription	Brain Anterior Caudate	brain
49	chr14:70112000-70114000	Weak transcription	Fetal Intestine Large	intestine
50	chr14:70112000-70114000	Weak transcription	Left Ventricle	heart

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