Variant report

Variant	rs17107169
Chromosome Location	chr14:70119654-70119655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:70077602..70079808-chr14:70118781..70121163,4	K562	blood:
2	chr14:70118595..70121036-chr14:70123489..70126542,3	K562	blood:
3	chr14:70114857..70122560-chr14:70122603..70126754,12	MCF-7	breast:
4	chr14:70116958..70119687-chr14:70123811..70125360,2	K562	blood:
5	chr14:70085556..70087478-chr14:70119417..70121355,2	MCF-7	breast:
6	chr14:70113887..70117052-chr14:70117331..70121263,5	K562	blood:

Variant related genes	Relation type
ENSG00000100647	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17107167	0.85[AFR][1000 genomes]
rs58658815	0.85[AFR][1000 genomes]
rs74060254	0.85[AFR][1000 genomes]
rs74060255	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049280	chr14:70036804-70172630	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv542124	chr14:70036804-70172630	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv456336	chr14:70081956-70574149	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv565007	chr14:70081956-70574149	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:70104800-70125600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:70108400-70121200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr14:70109000-70121400	Enhancers	Stomach Mucosa	stomach
4	chr14:70109400-70121200	Enhancers	Small Intestine	intestine
5	chr14:70109600-70121200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr14:70109800-70125400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:70110000-70122800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr14:70110200-70121400	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr14:70110400-70121400	Enhancers	Primary B cells from peripheral blood	blood
10	chr14:70110400-70124600	Weak transcription	Fetal Brain Female	brain
11	chr14:70112600-70123600	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr14:70113600-70120600	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr14:70113600-70121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:70113800-70119800	Enhancers	K562	blood
15	chr14:70113800-70121200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:70113800-70121200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr14:70114000-70120000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr14:70114000-70120200	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr14:70114000-70120200	Enhancers	HUVEC	blood vessel
20	chr14:70114000-70121000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr14:70114000-70121000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
22	chr14:70114000-70121000	Enhancers	Adipose Nuclei	Adipose
23	chr14:70114000-70121200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr14:70114000-70121200	Enhancers	Right Ventricle	heart
25	chr14:70114000-70121200	Enhancers	Sigmoid Colon	Sigmoid Colon
26	chr14:70114000-70121200	Enhancers	Skeletal Muscle Female	skeletal muscle
27	chr14:70114000-70121400	Enhancers	Colonic Mucosa	Colon
28	chr14:70114000-70121800	Enhancers	Psoas Muscle	Psoas
29	chr14:70114000-70125000	Enhancers	Fetal Intestine Large	intestine
30	chr14:70114000-70126400	Enhancers	Left Ventricle	heart
31	chr14:70114200-70120400	Enhancers	Fetal Heart	heart
32	chr14:70114200-70121000	Enhancers	Primary T cells fromperipheralblood	blood
33	chr14:70114400-70121200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr14:70114400-70121200	Enhancers	Spleen	Spleen
35	chr14:70114800-70120400	Enhancers	Primary hematopoietic stem cells	blood
36	chr14:70114800-70121400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr14:70115000-70121000	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr14:70115000-70121000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
39	chr14:70115000-70121400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr14:70115200-70119800	Enhancers	Fetal Thymus	thymus
41	chr14:70115200-70121400	Enhancers	HMEC	breast
42	chr14:70115400-70121800	Enhancers	Right Atrium	heart
43	chr14:70115600-70121200	Enhancers	Colon Smooth Muscle	Colon
44	chr14:70116000-70121200	Enhancers	Gastric	stomach
45	chr14:70116000-70121400	Enhancers	Duodenum Smooth Muscle	Duodenum
46	chr14:70116000-70125800	Enhancers	Pancreas	Pancrea
47	chr14:70116200-70121400	Enhancers	A549	lung
48	chr14:70116200-70121800	Enhancers	Liver	Liver
49	chr14:70116400-70120400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr14:70116400-70121000	Enhancers	Placenta	Placenta

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